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Three-photon head-mounted microscope for imaging deep cortical layers in freely moving rats
Alexandr Klioutchnikov1, Damian J Wallace1, Michael H Frosz2
1Department of Behavior and Brain Organization, Research Center Caesar, Bonn, Germany.
Nature Methods
|May 7, 2020
Summary
Researchers developed a head-mounted three-photon microscope for deep brain imaging in freely moving rats. This innovation allows stable observation of neuronal activity deep within the cortex during natural behaviors.
Area of Science:
- Neuroscience
- Biomedical Engineering
- Optical Imaging
Background:
- Imaging neuronal activity in deep cortical layers of freely moving animals is challenging.
- Existing microscopy techniques often lack the penetration depth or stability for in vivo studies of natural behaviors.
Purpose of the Study:
- To design and validate a head-mounted three-photon microscope for deep cortical layer imaging.
- To enable stable, long-term imaging of neuronal activity in freely moving rats.
Main Methods:
- Development of a head-mounted three-photon microscope system.
- Utilized a 1,320 nm excitation wavelength with a hollow-core fiber for stable pulse delivery.
- Implemented dispersion compensation for deep tissue penetration.
- Recorded neuronal activity in freely moving rats performing various behaviors.
Main Results:
- Achieved imaging depth greater than 1.1 mm below the cortical surface.
- Demonstrated stable imaging of layer 5 neuronal activity for over 1 hour.
- Successfully imaged neuronal activity during a range of natural behaviors in freely moving rats.
Conclusions:
- The developed three-photon microscope enables unprecedented deep cortical imaging in freely moving subjects.
- This technology facilitates the study of neural circuits underlying complex behaviors.
- Advances in fiber optics and dispersion compensation are crucial for deep-tissue in vivo imaging.

