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Updated: Dec 22, 2025

A Protocol for Computer-Based Protein Structure and Function Prediction
Published on: November 3, 2011
EffHunter: A Tool for Prediction of Effector Protein Candidates in Fungal Proteomic Databases
Karla Gisel Carreón-Anguiano1, Ignacio Islas-Flores2, Julio Vega-Arreguín3
1Unidad de Biotecnología, Centro de Investigación Científica de Yucatán, A.C., Calle 43 No. 130 X 32 y 34, Col. Chuburná de Hidalgo, C.P. 97205 Mérida, México.
Abstract:
Pathogens are able to deliver small-secreted, cysteine-rich proteins into plant cells to enable infection. The computational prediction of effector proteins remains one of the most challenging areas in the study of plant fungi interactions. At present, there are several bioinformatic programs that can help in the identification of these proteins; however, in most cases, these programs are managed independently. Here, we present EffHunter, an easy and fast bioinformatics tool for the identification of effectors. This predictor was used to identify putative effectors in 88 proteomes using characteristics such as size, cysteine residue content, secretion signal and transmembrane domains.
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