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Updated: Dec 22, 2025

Comparative Proteomic Analysis of Whole Kidney, Medulla, and Cortical Tubules in Diabetic Pathogenesis of Kidney Injury in Mice
Published on: May 2, 2025
Signaling pathways predisposing to chronic kidney disease progression
Mohamad Zaidan1,2, Martine Burtin1, Jitao David Zhang3
1Institut National de la Santé et de la Recherche Médicale (INSERM), U1151, CNRS UMR 8253, Institut Necker Enfants Malades (INEM), Department of Growth and Signaling, Université de Paris, Paris, France.
Abstract:
The loss of functional nephrons after kidney injury triggers the compensatory growth of the remaining ones to allow functional adaptation. However, in some cases, these compensatory events activate signaling pathways that lead to pathological alterations and chronic kidney disease. Little is known about the identity of these pathways and how they lead to the development of renal lesions. Here, we combined mouse strains that differently react to nephron reduction with molecular and temporal genome-wide transcriptome studies to elucidate the molecular mechanisms involved in these events. We demonstrated that nephron reduction led to 2 waves of cell proliferation: the first one occurred during the compensatory growth regardless of the genetic background, whereas the second one occurred, after a quiescent phase, exclusively in the sensitive strain and accompanied the development of renal lesions. Similarly, clustering by coinertia analysis revealed the existence of 2 waves of gene expression. Interestingly, we identified type I interferon (IFN) response as an early (first-wave) and specific signature of the sensitive (FVB/N) mice. Activation of type I IFN response was associated with G1/S cell cycle arrest, which correlated with p21 nuclear translocation. Remarkably, the transient induction of type I IFN response by poly(I:C) injections during the compensatory growth resulted in renal lesions in otherwise-resistant C57BL6 mice. Collectively, these results suggest that the early molecular and cellular events occurring after nephron reduction determine the risk of developing late renal lesions and point to type I IFN response as a crucial event of the deterioration process.
Insights
Kidney injury triggers compensatory growth, but in some mice, this activates a type I interferon response, leading to cell cycle arrest and chronic kidney disease. This interferon response is a key driver of renal lesion development.
Area of Science:
- Nephrology
- Immunology
- Molecular Biology
Background:
- Kidney injury causes compensatory nephron growth, which can paradoxically lead to chronic kidney disease.
- The molecular pathways driving these pathological alterations after nephron loss are not well understood.
Purpose of the Study:
- To elucidate the molecular mechanisms underlying pathological changes following nephron reduction.
- To identify signaling pathways involved in the development of renal lesions after compensatory growth.
Main Methods:
- Utilized genetically distinct mouse strains with differential responses to nephron reduction.
- Performed temporal genome-wide transcriptome studies and molecular analyses.
- Employed coinertia analysis for gene expression clustering.
Main Results:
- Identified two distinct waves of cell proliferation and gene expression post-nephron reduction.
- Discovered a type I interferon (IFN) response as an early, specific signature in sensitive mice, correlating with cell cycle arrest.
- Demonstrated that inducing type I IFN response in resistant mice caused renal lesions.
Conclusions:
- Early molecular and cellular events after nephron reduction dictate the risk of developing late renal lesions.
- Type I IFN response is a critical factor in the progression of kidney damage and chronic kidney disease development.
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Nephrons
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