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Published on: May 5, 2023
DNA Repair and Mutagenesis in Vertebrate Mitochondria: Evidence for Asymmetric DNA Strand Inheritance
Bakhyt T Matkarimov1, Murat K Saparbaev2
1National Laboratory Astana, Nazarbayev University, Astana, Kazakhstan.
Abstract:
A variety of endogenous and exogenous factors induce chemical and structural alterations in cellular DNA in addition to the errors occurring throughout DNA synthesis. These types of DNA damage are cytotoxic, miscoding or both and are believed to be at the origin of cancer and other age-related diseases. A human cell, aside from nuclear DNA, contains thousands of copies of mitochondrial DNA (mtDNA), a double-stranded, circular molecule of 16,569 bp. It has been proposed that mtDNA is a critical target of reactive oxygen species: by-products of oxidative phosphorylation that are generated in the organelle during aerobic respiration. Indeed, oxidative damage to mtDNA is more extensive and persistent as compared to that to nuclear DNA. Although transversions are the hallmark of mutations induced by reactive oxygen species, paradoxically, the majority of mtDNA mutations that occur during ageing and cancer are transitions. Furthermore, these mutations show a striking strand orientation bias: T→C/G→A transitions preferentially occur on the light strand, whereas C→T/A→G on the heavy strand of mtDNA. Here, we propose that the majority of mtDNA progenies, created after multiple rounds of DNA replication, are derived from the heavy strand only, owing to asymmetric replication of the DNA strand anchored to the inner membrane via the D-loop structure.
Insights
Mitochondrial DNA (mtDNA) damage, linked to aging and cancer, shows unusual mutation patterns. We propose asymmetric replication favors heavy strand DNA, explaining these observed transition biases.
Area of Science:
- Mitochondrial biology
- Molecular genetics
- DNA damage and repair
Background:
- Cellular DNA is susceptible to damage from various endogenous and exogenous factors, contributing to cancer and aging.
- Mitochondrial DNA (mtDNA), distinct from nuclear DNA, is vulnerable to oxidative damage.
- Oxidative damage to mtDNA is more pronounced than to nuclear DNA.
Purpose of the Study:
- To investigate the paradox of transition mutations in mtDNA during aging and cancer, despite reactive oxygen species typically causing transversions.
- To explain the observed strand orientation bias in mtDNA mutations.
- To propose a mechanism for the preferential accumulation of specific mtDNA mutations.
Main Methods:
- Analysis of existing literature on mtDNA damage and mutation patterns.
- Theoretical modeling of mtDNA replication dynamics.
- Comparison of mutation types and strand bias in aged and cancerous cells.
Main Results:
- Mitochondrial DNA mutations during aging and cancer predominantly exhibit transition patterns, not the expected transversions from oxidative stress.
- A significant strand orientation bias exists for these transitions.
- The study proposes asymmetric replication as the underlying cause for these observations.
Conclusions:
- Asymmetric replication, favoring the heavy strand of mtDNA due to its anchoring in the D-loop structure, likely explains the observed mutation patterns.
- This mechanism offers a novel perspective on mtDNA mutation accumulation in aging and disease.
- Understanding mtDNA replication dynamics is crucial for comprehending age-related diseases and cancer.
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