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Minding the gap in HIV host genetics: opportunities and challenges
Shanelle N Gingras1,2, David Tang3,4, Jeffrey Tuff3,4
1JC Wilt Infectious Diseases Research Centre, National HIV and Retrovirology Lab, National Microbiology Laboratories, Public Health Agency of Canada, Winnipeg, Canada. gingrass@myumanitoba.ca.
Genome-wide association studies (GWAS) have identified genetic variants for HIV, but lack diversity. Including multiethnic cohorts in GWAS is crucial for equitable precision medicine and improved HIV outcomes in all populations.
Area of Science:
- Genomics
- Human genetics
- HIV research
Background:
- Genome-wide association studies (GWAS) have identified genetic variants linked to HIV outcomes.
- Current GWAS predominantly focus on European cohorts, limiting generalizability.
- Human Leukocyte Antigen (HLA) associations with HIV are known to be population-specific.
Purpose of the Study:
- To highlight the need for increased diversity in GWAS for HIV research.
- To address health disparities arising from a lack of representation in genomic studies.
- To emphasize the importance of multiethnic cohorts for advancing precision medicine.
Main Methods:
- Review of existing GWAS findings in HIV research.
- Analysis of the impact of cohort diversity on genetic variant identification.
- Discussion of leveraging large, multiethnic datasets (e.g., UK Biobank, All of Us).
Main Results:
- Lack of diversity in GWAS leads to potential disadvantages for non-European individuals in precision medicine.
- Population-specific genetic variants, particularly HLA associations, necessitate diverse study populations.
- Existing large, multiethnic cohorts offer opportunities to expand genomic research.
Conclusions:
- Increased diversity in GWAS is essential for accurate genetic insights across populations.
- Addressing underrepresentation in genomic research can mitigate health disparities.
- Utilizing diverse cohorts will improve the efficacy of precision medicine for HIV and other diseases.
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