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MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain.

Bin He1,2,3, Zhengyi Yang2, Lingzhong Fan2,4

  • 1School of Mechanical and Power Engineering, Harbin University of Science and Technology, Harbin, China.

Frontiers in Neuroinformatics
|May 16, 2020
PubMed
Summary

A new toolbox, MonkeyCBP, enhances non-human primate brain atlases using advanced neuroimaging analysis. This tool improves brain extraction, registration, and validity for better brain research.

Keywords:
brain atlasdiffusion tractographyneuroimaging pipelineparallel computingparcellation

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Area of Science:

  • Neuroscience
  • Neuroimaging
  • Computational Biology

Background:

  • Non-human primate models are crucial for understanding brain development, cognition, and psychiatric disorders.
  • Neuroimaging techniques like MRI are vital for examining brain structure and function.
  • Brain atlases are essential tools for neuroimaging data analysis, with various versions based on different criteria.

Purpose of the Study:

  • To present a modified toolbox, MonkeyCBP, for monkey brain parcellation based on the ATPP pipeline.
  • To address species-specific differences in brain structure and connectivity crucial for accurate atlas construction.
  • To provide a high-throughput, low-labor computational tool for the non-human primate neuroimaging community.

Main Methods:

  • Developed MonkeyCBP, a variation of the Automatic Tractography-Based Brain Parcellation (ATPP) toolbox.
  • Implemented major alterations in brain extraction, image registration, and validity indices tailored for primate brains.
  • Applied the toolbox to parcellate the posterior cingulate cortex and frontal pole in rhesus monkeys.

Main Results:

  • Demonstrated the efficacy of MonkeyCBP's alterations in parcellating specific brain regions of the rhesus monkey.
  • The new toolbox successfully addresses significant differences in processing between human and non-human primate brains.
  • The MonkeyCBP toolbox is publicly available, facilitating wider adoption and research.

Conclusions:

  • MonkeyCBP offers an effective solution for creating detailed brain atlases in non-human primates.
  • The toolbox enhances the accuracy and efficiency of neuroimaging data analysis in primate research.
  • This advancement is expected to significantly benefit the non-human primate neuroimaging community.