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Describing a Transcription Factor Dependent Regulation of the MicroRNA Transcriptome
Published on: June 15, 2016
Deregulation of miRNAs-cMYC circuits is a key event in refractory celiac disease type-2 lymphomagenesis
Valentina Vaira1, Gabriella Gaudioso1,2, Maria Antonella Laginestra3
1Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Abstract:
A percentage of celiac disease (CD) patients develop refractory type-2 disease (RCD2), a condition associated with increased risk of enteropathy-associated T-cell-lymphoma (EATL) and without therapeutic option. Therefore, we profiled the miRNome in series of peripheral T-cell lymphomas (PTCLs), CD, RCD1 or 2 and in the murine interleukin-15 (IL15)-transgenic (TG) model of RCD. The transcriptome was analyzed in 18 intestinal T-cell lymphomas (ITLs). Bioinformatics pipelines provided significant microRNA (miRNA) lists and predicted targets that were confirmed in a second set of patients. Our data show that ITLs have a unique miRNA profile with respect to other PTCLs. The c-MYC regulated miR-17/92 cluster distinguishes monomorphic epitheliotropic ITL (MEITL) from EATL and prognosticates EATL outcome. These miRNAs are decreased in IL15-TG mice upon Janus kinase (JAK) inhibition. The random forest algorithm identified a signature of 38 classifier miRNAs, among which, the miR-200 and miR-192/215 families were progressively lost in RCD2 and ITL-CD, whereas miR-17/92 and C19MC miRNAs were up-regulated. Accordingly, SMAD3, MDM2, c-Myc and activated-STAT3 were increased in RCD2 and EATL tissues while JAK inhibition in IL15-TG mice restored their levels to baseline. Our data suggest that miRNAs circuit supports activation of STAT3 and c-Myc oncogenic signaling in RCD2, thus contributing to lymphomagenesis. This novel understanding might pave the way to personalized medicine approaches for RCD and EATL.
Insights
Refractory celiac disease type 2 (RCD2) patients have unique microRNA (miRNA) profiles linked to T-cell lymphoma development. Targeting these miRNAs may offer new therapeutic avenues for RCD2 and enteropathy-associated T-cell lymphoma.
Area of Science:
- Oncology
- Immunology
- Genetics
Background:
- Refractory celiac disease type 2 (RCD2) increases enteropathy-associated T-cell lymphoma (EATL) risk, lacking effective treatments.
- MicroRNAs (miRNAs) play crucial roles in cellular processes and disease pathogenesis.
- Understanding miRNA dysregulation in RCD2 and EATL is vital for developing targeted therapies.
Purpose of the Study:
- To profile the miRNome in refractory celiac disease (RCD) and related T-cell lymphomas.
- To identify specific miRNA signatures associated with RCD2 and EATL.
- To investigate the role of miRNAs in oncogenic signaling pathways implicated in RCD2 lymphomagenesis.
Main Methods:
- miRNome profiling of peripheral T-cell lymphomas (PTCLs), celiac disease (CD), RCD1/2, and a murine IL15-transgenic (TG) model.
- Transcriptome analysis of 18 intestinal T-cell lymphomas (ITLs).
- Bioinformatics analysis for miRNA identification and target prediction, validated in patient cohorts; random forest algorithm for miRNA signature identification.
Main Results:
- Intestinal T-cell lymphomas (ITLs) exhibit distinct miRNA profiles compared to other PTCLs.
- The c-MYC regulated miR-17/92 cluster differentiates monomorphic epitheliotropic ITL (MEITL) from EATL and predicts EATL outcomes.
- Loss of miR-200 and miR-192/215 families, with upregulation of miR-17/92 and C19MC miRNAs, observed in RCD2 and ITL-CD; associated with increased SMAD3, MDM2, c-Myc, and activated-STAT3 levels.
Conclusions:
- miRNA dysregulation contributes to STAT3 and c-Myc activation in RCD2, promoting lymphomagenesis.
- The identified miRNA signatures may serve as biomarkers for RCD2 and EATL.
- This research provides a foundation for developing novel, personalized therapeutic strategies targeting miRNA pathways in RCD2 and EATL.
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