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Published on: August 12, 2015
Opposing Functions of BRD4 Isoforms in Breast Cancer
Shwu-Yuan Wu1, Chien-Fei Lee2, Hsien-Tsung Lai2
1Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Abstract:
Bromodomain-containing protein 4 (BRD4) is a cancer therapeutic target in ongoing clinical trials disrupting primarily BRD4-regulated transcription programs. The role of BRD4 in cancer has been attributed mainly to the abundant long isoform (BRD4-L). Here we show, by isoform-specific knockdown and endogenous protein detection, along with transgene expression, the less abundant BRD4 short isoform (BRD4-S) is oncogenic while BRD4-L is tumor-suppressive in breast cancer cell proliferation and migration, as well as mammary tumor formation and metastasis. Through integrated RNA-seq, genome-wide ChIP-seq, and CUT&RUN association profiling, we identify the Engrailed-1 (EN1) homeobox transcription factor as a key BRD4-S coregulator, particularly in triple-negative breast cancer. BRD4-S and EN1 comodulate the extracellular matrix (ECM)-associated matrisome network, including type II cystatin gene cluster, mucin 5, and cathepsin loci, via enhancer regulation of cancer-associated genes and pathways. Our work highlights the importance of targeted therapies for the oncogenic, but not tumor-suppressive, activity of BRD4.
Insights
The short isoform of Bromodomain-4 (BRD4-S) drives cancer, while the long isoform (BRD4-L) suppresses it. BRD4-S and Engrailed-1 regulate the extracellular matrix in breast cancer.
Area of Science:
- Molecular Biology
- Cancer Research
- Genomics
Background:
- Bromodomain-containing protein 4 (BRD4) is a key regulator of transcription and a cancer therapeutic target.
- The role of BRD4 in cancer has been primarily attributed to its long isoform (BRD4-L).
Purpose of the Study:
- To investigate the distinct roles of BRD4-L and BRD4-S isoforms in breast cancer.
- To identify key regulators and pathways modulated by oncogenic BRD4 isoforms.
Main Methods:
- Isoform-specific knockdown and transgene expression.
- Endogenous protein detection.
- Integrated RNA-sequencing, ChIP-sequencing, and CUT&RUN profiling.
Main Results:
- BRD4-S exhibits oncogenic activity, promoting breast cancer cell proliferation, migration, and metastasis.
- BRD4-L demonstrates tumor-suppressive functions in breast cancer.
- BRD4-S and Engrailed-1 (EN1) co-regulate the extracellular matrix (ECM) matrisome network, including specific gene clusters, in triple-negative breast cancer.
Conclusions:
- BRD4-S is an oncogenic driver in breast cancer, distinct from the tumor-suppressive BRD4-L.
- The BRD4-S/EN1 complex modulates ECM genes, highlighting a novel therapeutic vulnerability.
- Targeted therapies should focus on the oncogenic activity of BRD4-S, sparing its tumor-suppressive functions.
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