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Related Concept Videos

Epigenetic Regulation01:37

Epigenetic Regulation

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Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
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Diploid organisms inherit genetic material through chromosomes from both parents. Copies of the same gene are known as alleles. In most cases, both alleles are simultaneously expressed and allow various cellular processes to function optimally. If one of the alleles is missing or mutated, the expression of the other allele can compensate; however, this is not true for all genes.
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Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying...
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The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
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Sample Preparation to Bioinformatics Analysis of DNA Methylation: Association Strategy for Obesity and Related Trait Studies
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A New Robust Epigenetic Model for Forensic Age Prediction.

Alberto Montesanto1, Patrizia D'Aquila1, Vincenzo Lagani2,3

  • 1Department of Biology, Ecology and Earth Sciences, University of Calabria, Rende, 87036, Italy.

Journal of Forensic Sciences
|May 27, 2020
PubMed
Summary

Forensic scientists developed a simplified epigenetic clock for age prediction using DNA methylation markers. This new model achieves a median error of 4.5 years in the Italian population, aiding forensic investigations.

Keywords:
ELOVL2FDPage predictionautomated machine learningepigenetic clockexternally visible characteristicsmethylation

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Area of Science:

  • Forensic Science
  • Genetics
  • Biotechnology

Background:

  • Forensic DNA phenotyping aims to predict individual characteristics from biological samples.
  • Accurate age prediction is crucial as aging affects many externally visible traits.
  • Existing epigenetic clocks are highly accurate but not feasible for typical forensic labs.

Purpose of the Study:

  • To develop a simplified epigenetic clock for age prediction suitable for forensic applications.
  • To identify reliable DNA methylation markers for age estimation in the Italian population.
  • To validate a machine learning model for forensic age prediction.

Main Methods:

  • Analysis of 42 methylation markers from five genes in 330 Italian subjects.
  • Development of a prediction model using a machine learning approach (ridge linear regression).
  • Validation of the best-performing model on an independent sample of 83 individuals.

Main Results:

  • A ridge linear regression model with eight methylation markers was identified as the best predictor.
  • The model achieved a median prediction error of 4.5 years on an independent validation set.
  • The study successfully validated an epigenetic model for age prediction in the Italian population.

Conclusions:

  • A simplified epigenetic clock using DNA methylation markers has been developed and validated for age prediction.
  • The model shows promise for forensic casework, with a median error of 4.5 years.
  • Limitations include potential reduced accuracy for advanced ages in forensic contexts.