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Viruses with RNA Genomes01:29

Viruses with RNA Genomes

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RNA viruses are categorized into positive-strand, negative-strand, or double-stranded groups based on their genomic structure and replication mechanisms. This classification dictates how they exploit host cellular machinery for protein synthesis and replication. Some RNA viruses also utilize reverse transcription as part of their life cycle, further diversifying their replication strategies.Positive-Strand RNA VirusesPositive-strand RNA viruses have genomes that function directly as messenger...
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Size and Structure of Viral Genomes01:26

Size and Structure of Viral Genomes

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Viral genomes exhibit remarkable diversity in size, structure, and composition, influencing their replication strategies and interactions with host cells. These genomes consist of either DNA or RNA and may be linear or circular. Additionally, they can be single-stranded or double-stranded, with each configuration affecting how the virus propagates within a host. RNA viruses, for instance, generally have smaller genomes than DNA viruses, a factor that contributes to their high mutation rates and...
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Retrovirus Life Cycles01:10

Retrovirus Life Cycles

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Retroviruses have a single-stranded RNA genome that undergoes a special form of replication. Once the retrovirus has entered the host cell, an enzyme called reverse transcriptase synthesizes double-stranded DNA from the retroviral RNA genome. This DNA copy of the genome is then integrated into the host’s genome inside the nucleus via an enzyme called integrase. Consequently, the retroviral genome is transcribed into RNA whenever the host’s genome is transcribed, allowing the...
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DNA Bacteriophages01:26

DNA Bacteriophages

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Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
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Viral Recombination00:57

Viral Recombination

24.7K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
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LTR Retrotransposons03:08

LTR Retrotransposons

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LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
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Related Experiment Video

Updated: Dec 20, 2025

Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes
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Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes

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Complete genome sequence of Tacaribe virus.

Julia Holzerland1, Anne Leske1, Lucie Fénéant1

  • 1Junior Research Group Arenavirus Biology, Friedrich-Loeffler-Institut, Südufer 10, Greifswald, Insel Riems, Germany.

Archives of Virology
|May 29, 2020
PubMed
Summary

This study presents the first complete genome sequence for Tacaribe virus (TCRV), correcting errors and completing ends critical for RNA synthesis. This provides a foundation for future arenavirus research.

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Related Experiment Videos

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Combining Analysis of DNA in a Crude Virion Extraction with the Analysis of RNA from Infected Leaves to Discover New Virus Genomes
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Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins
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Area of Science:

  • Virology
  • Molecular Biology
  • Genomics

Background:

  • Tacaribe virus (TCRV) is a prototype New World arenavirus, crucial for studying arenavirus biology despite not being a human pathogen.
  • Existing TCRV genome sequences have discrepancies and are incomplete, hindering accurate molecular and genetic research.

Purpose of the Study:

  • To provide the first complete genome sequence for the Tacaribe virus (TCRV) TRVL-11573 strain.
  • To correct identified errors and complete the genome ends, including regulatory elements for RNA synthesis.

Main Methods:

  • Next-generation sequencing to obtain the complete viral genome.
  • Bioinformatic analysis to compare sequences and identify discrepancies.
  • Phylogenetic analysis to compare with related strains.

Main Results:

  • The first complete genome sequence for TCRV TRVL-11573 is presented, including completed 5' and 3' ends.
  • Discrepancies in the S segment intergenic region and errors in the L segment 3' end were identified and corrected.
  • Significant differences in the GP and NP proteins were noted, including a 12-amino-acid deletion in GP and a 4-amino-acid exchange in NP.

Conclusions:

  • The corrected and complete TCRV genome sequence provides a reliable foundation for future research.
  • The TRVL-11573 strain is nearly identical to a strain isolated in Florida in 2012.
  • Accurate TCRV genomic data is essential for advancing arenavirus molecular and genetic studies.