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Updated: Dec 20, 2025

High-throughput Measurement of Gut Transit Time Using Larval Zebrafish
Published on: October 23, 2018
An automated sensitive approach for measuring whole gut transit time
Keeley L Baker1,2, Michelle Izydorczak1, Ruaidhri Jackson3
1The John B. Pierce Laboratory, New Haven, CT, USA.
A new method uses fluorescent dye and automated imaging to accurately measure whole gut transit time in mice. This approach offers a sensitive, objective, and cost-effective solution for rodent gastrointestinal studies.
Area of Science:
- Animal models
- Gastrointestinal physiology
- Biomedical imaging
Background:
- Current methods for measuring rodent whole gut transit time lack sensitivity, objectivity, and automation.
- There is a need for improved techniques to accurately assess gastrointestinal transit in preclinical research.
Purpose of the Study:
- To develop and validate a novel, automated method for measuring whole gut transit time in mice.
- To enhance the sensitivity, objectivity, and throughput of gastrointestinal transit time measurements.
Main Methods:
- Oral gavage of non-toxic fluorescent dye particles in mice.
- Automated fluorescence imaging of 8 cages simultaneously using custom MATLAB code for bolus detection.
- Comparison of automated detection with blind experimenter assessments.
Main Results:
- High sensitivity detection of fluorescent boli, with ready rejection of unstained boli.
- Automated system demonstrated high correlation (r = 0.95 ± 0.02) with experimenter assessments.
- Mean time to first fluorescent bolus ranged from 223-264 minutes post-gavage.
Conclusions:
- The developed method provides a reliable, automatic, and low-cost approach for measuring gastrointestinal transit time in mice.
- This novel technique improves the efficiency and accuracy of preclinical rodent studies.
- The automated system is robust and suitable for high-throughput analysis.
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