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Updated: Dec 19, 2025

Methyl-binding DNA capture Sequencing for Patient Tissues
Published on: October 31, 2016
Methylation and serum response factor mediated in the regulation of gene ARRDC3 in breast cancer
Sheyu Lin1, Ge Zhang1,2, Yongfang Zhao1,3
1School of Life Sciences, Nantong University Nantong 226019, China.
Abstract:
Breast cancer poses a serious threat to women's life and health and many factors contribute to breast cancer including gene mutation and epigenetics. Gene ARRDC3 was usually repressed in breast cancer and methylation in promoter was reported to be involved in gene ARRDC3 expression regulation. To this end, the methylation status for gene ARRDC3 promoter was assayed by the Massarray quantitative method. The results indicated that different methylation level CpG sites including CpG_6, CpG_13.14, CpG_17.18, and CpG_25 existed between the tumor tissue and the adjacent normal tissue. In order to further verify whether methylation participated in gene ARRDC3 expression, three cell lines were treated with methylation inhibitor Aza-2'-deoxycytidine including A-375, HepG2, and MDA-MB-231. The results revealed that methylation inhibition observably increased ARRDC3 mRNA expression. Then we confirmed the effective length of promoter through the fluorescence report assay used for further analysis. The results showed that the 1746 bp length promoter produced the maximum fluorescence signal. To obtain the direct evidence that methylation in gene ARRDC3 promoter mediated in ARRDC3 expression regulation, the promoter plasmid was methylated by M.SssI enzyme and subjected to the fluorescence report assay. The results showed that methylation in the promoter markedly suppressed relative luciferase activity. In addition, the ecRNA was also analyzed for the methylation regulation and results illustrated that the ecRNA did not regulate ARRDC3 promoter methylation. However, several methylation CpG sites were found to be around CpG_25 site such as TGCATGG, TTGCAA, TTCGTA, and ATAGTT. These sites provide a good clue for further research in methylation for gene ARRDC3 expression regulation. Furthermore, the possible transcription factors involved in the ARRDC3 regulation were investigated by western blot, luciferase activity analysis and ChiP assay. These results documented that gene ARRDC3 expression was improved by SRF and that the methylation affected the interaction between the promoter and SRF. Lastly, the inhibition role of gene ARRDC3 on breast cancer was probed in vivo and in vitro and our results demonstrated that ARRDC3 could inhibit breast cancer growth through the STAT3 signal pathway. In summary, Gene ARRDC3 was inhibited by promoter methylation and was promoted by transcription factor SRF by binding the promoter region and the inhibition on breast cancer growth was exerted by ARRDC3 through STAT3 signal pathway.
Insights
Gene ARRDC3 expression is suppressed by promoter methylation in breast cancer. Methylation inhibition and transcription factor SRF enhance ARRDC3, which inhibits cancer growth via the STAT3 pathway.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Breast cancer is a significant health concern, influenced by genetic and epigenetic factors.
- The ARRDC3 gene is frequently repressed in breast cancer, with promoter methylation implicated in its regulation.
Purpose of the Study:
- To investigate the role of ARRDC3 promoter methylation in breast cancer.
- To elucidate the regulatory mechanisms of ARRDC3 expression and its impact on breast cancer progression.
Main Methods:
- Quantitative methylation analysis (Massarray) of ARRDC3 promoter CpG sites.
- In vitro studies using methylation inhibitors (Aza-2'-deoxycytidine) and reporter assays.
- Investigation of transcription factor binding (SRF) and signaling pathways (STAT3).
Main Results:
- Differential methylation of ARRDC3 promoter CpG sites was observed between tumor and normal tissues.
- Methylation inhibition increased ARRDC3 mRNA expression, while promoter methylation suppressed luciferase activity.
- ARRDC3 expression is promoted by transcription factor SRF, and ARRDC3 inhibits breast cancer growth through the STAT3 pathway.
Conclusions:
- Promoter methylation is a key mechanism for suppressing ARRDC3 expression in breast cancer.
- ARRDC3 acts as a tumor suppressor, inhibiting breast cancer growth via the STAT3 signaling pathway.
- Targeting ARRDC3 regulation presents a potential therapeutic strategy for breast cancer.
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