Unexpected Differences between Two Closely Related Bacterial P450 Camphor Monooxygenases
Vidhi C Murarka1, Dipanwita Batabyal1, Jose A Amaya1
1Departments of Molecular Biology and Biochemistry, Pharmaceutical Sciences, and Chemistry, University of California, Irvine, California 92697-3900, United States.
Biochemistry
|June 20, 2020
Summary
Bacterial P450tcu, despite structural similarity to P450cam, shows unique substrate binding and activation mechanisms. Differences in conformational dynamics explain distinct enzymatic properties and camphor oxidation pathways.
Area of Science:
- Biochemistry
- Enzymology
- Structural Biology
Background:
- Bacterial cytochrome P450cam and CYP101D1 catalyze camphor oxidation for carbon assimilation.
- A newly discovered P450tcu shares high sequence identity and similar enzymatic function with P450cam.
- P450tcu exhibits distinct characteristics not observed in P450cam, suggesting novel catalytic mechanisms.
Purpose of the Study:
- To investigate the unusual features of P450tcu compared to P450cam.
- To elucidate the structural and dynamic differences influencing their enzymatic properties.
- To understand the mechanisms of substrate hydroxylation and activation in both enzymes.
Main Methods:
- X-ray crystallography to determine the structure of P450tcu with bound substrate.
- Molecular dynamics simulations to assess enzyme flexibility and proton access.
- Isothermal titration calorimetry to analyze substrate binding thermodynamics.
Main Results:
- X-ray structures reveal product in multiple orientations for P450tcu, indicating *in crystallo* hydroxylation via X-ray reduction.
- P450tcu displays slower spin transition upon substrate binding compared to P450cam.
- Isothermal titration calorimetry shows entropically driven binding in P450cam (ΔH > 0) versus enthalpically driven binding in P450tcu (ΔH < 0).
Conclusions:
- Despite high sequence and functional similarity, P450tcu and P450cam exhibit significantly different substrate binding and activation properties.
- Conformational dynamics play a crucial role in the distinct catalytic behaviors of these closely related P450 enzymes.
- P450tcu's flexibility facilitates proton access and O2 activation, leading to unique hydroxylation mechanisms.
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