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Updated: Dec 18, 2025

Identification of protein complexes with quantitative proteomics in S. cerevisiae
Published on: March 4, 2009
A quantitative inventory of yeast P body proteins reveals principles of composition and specificity
Wenmin Xing1, Denise Muhlrad2, Roy Parker2
1Department of Biophysics, Howard Hughes Medical Institute, UT Southwestern Medical Center, Dallas, United States.
Abstract:
P bodies are archetypal biomolecular condensates that concentrate proteins and RNA without a surrounding membrane. While dozens of P body proteins are known, the concentrations of components in the compartment have not been measured. We used live cell imaging to generate a quantitative inventory of the major proteins in yeast P bodies. Only seven proteins are highly concentrated in P bodies (5.1-15µM); the 24 others examined are appreciably lower (most ≤ 2.6µM). P body concentration correlates inversely with cytoplasmic exchange rate. Sequence elements driving Dcp2 concentration into P bodies are distributed across the protein and act synergistically. Our data indicate that P bodies, and probably other condensates, are compositionally simpler than suggested by proteomic analyses, with implications for specificity, reconstitution and evolution.

