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Dissimilarity-Overlap analysis of replicate enrichment communities
Jean C C Vila1,2, Yang-Yu Liu3,4, Alvaro Sanchez5,6
1Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06511, USA. jean.vila@yale.edu.
The ISME Journal
|June 20, 2020
Summary
Microbial community dynamics show a negative correlation between dissimilarity and overlap in replicate habitats, suggesting general convergence. However, alternative states can arise even with shared taxa, indicating dynamics are not always universal.
Area of Science:
- Microbial Ecology
- Community Dynamics
- Systems Biology
Background:
- Microbial community composition varies across habitats and over time.
- Predictive models of microbial population dynamics are crucial but face challenges.
- Understanding universality versus environment-specific dynamics is a key question.
Purpose of the Study:
- To investigate microbial population dynamics in experimental in vitro communities.
- To assess the universality of microbial community dynamics across different nutrient conditions.
- To benchmark the Dissimilarity-Overlap Analysis (DOA) tool.
Main Methods:
- Application of Dissimilarity-Overlap Analysis (DOA) to in vitro microbial communities.
- Experimental manipulation of nutrient composition in replicate habitats.
- Analysis of community dissimilarity and overlap metrics.
Main Results:
- A negative correlation between Dissimilarity and Overlap was observed in replicate habitats.
- This suggests microbial population dynamics are generally convergent or universal.
- Alternative community states can form, linked to specific taxa, even in identical habitats.
Conclusions:
- The study benchmarks DOA, supporting its core assumptions.
- Communities with shared taxa and abiotic factors typically show a negative Dissimilarity-Overlap correlation.
- Microbial dynamics are generally convergent but not universally so, with specific taxa influencing alternative states.
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