Expression Pattern of the Pneumocystis jirovecii Major Surface Glycoprotein Superfamily in Patients with Pneumonia
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Published on: February 23, 2014
Emanuel Schmid-Siegert1, Sophie Richard2, Amanda Luraschi2
1Vital-IT Group, SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland.
Background:
The human pathogen Pneumocystis jirovecii harbors 6 families of major surface glycoproteins (MSGs) encoded by a single gene superfamily. MSGs are presumably responsible for antigenic variation and adhesion to host cells. The genomic organization suggests that a single member of family I is expressed at a given time per cell, whereas members of the other families are simultaneously expressed.
Methods:
We analyzed RNA sequences expressed in several clinical samples, using specific weighted profiles for sorting of reads and calling of single-nucleotide variants to estimate the diversity of the expressed genes.
Results:
A number of different isoforms of at least 4 MSG families were expressed simultaneously, including isoforms of family I, for which confirmation was obtained in the wet laboratory.
Conclusion:
These observations suggest that every single P. jirovecii population is made of individual cells with distinct surface properties. Our results enhance our understanding of the unique antigenic variation system and cell surface structure of P. jirovecii.
Insights
Pneumocystis jirovecii major surface glycoproteins (MSGs) exhibit simultaneous expression of multiple isoforms, including Family I. This finding reveals diverse cell surface properties within P. jirovecii populations, impacting antigenic variation.
Area of Science:
- Medical Mycology
- Molecular Biology
- Immunology
Background:
- Pneumocystis jirovecii, an opportunistic human pathogen, possesses six families of major surface glycoproteins (MSGs).
- MSGs are critical for P. jirovecii's antigenic variation and host cell adhesion.
- Gene organization implies simultaneous expression of non-Family I MSGs and single Family I MSG expression per cell.
Purpose of the Study:
- To investigate the expression patterns of P. jirovecii major surface glycoproteins (MSGs).
- To determine the diversity of expressed MSG isoforms within clinical samples.
Main Methods:
- RNA sequencing of clinical samples.
- Utilized specific weighted profiles for read sorting.
- Employed single-nucleotide variant calling to assess gene diversity.
Main Results:
- Simultaneous expression of multiple MSG isoforms from at least four families was observed.
- Confirmed co-expression of Family I MSG isoforms in wet laboratory experiments.
- Demonstrated significant diversity in expressed genes within P. jirovecii populations.
Conclusions:
- P. jirovecii populations comprise individual cells with distinct surface protein profiles.
- These findings advance the understanding of P. jirovecii's unique antigenic variation mechanisms.
- The diverse surface properties likely play a role in host-pathogen interactions.
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