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Updated: Dec 17, 2025

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
Towards new horizons: characterization, classification and implications of the tumour antigenic repertoire
Sebastian P Haen1,2,3, Markus W Löffler4,5,6,7,8, Hans-Georg Rammensee4,5,6
1Department of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen, Germany. s.haen@uke.de.
Abstract:
Immune-checkpoint inhibition provides an unmatched level of durable clinical efficacy in various malignancies. Such therapies promote the activation of antigen-specific T cells, although the precise targets of these T cells remain unknown. Exploiting these targets holds great potential to amplify responses to treatment, such as by combining immune-checkpoint inhibition with therapeutic vaccination or other antigen-directed treatments. In this scenario, the pivotal hurdle remains the definition of valid HLA-restricted tumour antigens, which requires several levels of evidence before targets can be established with sufficient confidence. Suitable antigens might include tumour-specific antigens with alternative or wild-type sequences, tumour-associated antigens and cryptic antigens that exceed exome boundaries. Comprehensive antigen classification is required to enable future clinical development and the definition of innovative treatment strategies. Furthermore, clinical development remains challenging with regard to drug manufacturing and regulation, as well as treatment feasibility. Despite these challenges, treatments based on diligently curated antigens combined with a suitable therapeutic platform have the potential to enable optimal antitumour efficacy in patients, either as monotherapies or in combination with other established immunotherapies. In this Review, we summarize the current state-of-the-art approaches for the identification of candidate tumour antigens and provide a structured terminology based on their underlying characteristics.
Insights
Identifying valid tumor antigens is crucial for enhancing cancer immunotherapies like immune-checkpoint inhibition. This review outlines methods for defining these antigens to improve treatment efficacy and develop new cancer therapies.
Area of Science:
- Oncology
- Immunology
- Biochemistry
Background:
- Immune-checkpoint inhibitors offer durable efficacy in cancer treatment by activating T cells.
- The specific targets of these T cells are largely unknown, limiting therapeutic optimization.
- Identifying tumor antigens is key to enhancing responses to immunotherapies.
Purpose of the Study:
- To review current methods for identifying and classifying tumor antigens.
- To establish a structured terminology for tumor antigens based on their characteristics.
- To highlight challenges and opportunities in developing antigen-directed cancer therapies.
Main Methods:
- Review of state-of-the-art approaches for tumor antigen identification.
- Analysis of different antigen categories: tumor-specific, tumor-associated, and cryptic antigens.
- Discussion of evidence required for validating HLA-restricted tumor antigens.
Main Results:
- Current methods for tumor antigen discovery are diverse, encompassing various tumor types.
- A structured classification system for tumor antigens is proposed.
- Challenges in clinical development include manufacturing, regulation, and feasibility.
Conclusions:
- Accurate identification and classification of tumor antigens are essential for advancing cancer immunotherapy.
- Antigen-directed therapies, combined with immune-checkpoint inhibition, hold promise for improved antitumour efficacy.
- Further research and structured approaches are needed to overcome clinical development hurdles.
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