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Updated: Dec 17, 2025

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Unraveling the Unseen Players in the Ocean - A Field Guide to Water Chemistry and Marine Microbiology
Published on: November 5, 2014
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Macrofaunal control of microbial community structure in continental margin sediments
Longhui Deng1, Damian Bölsterli2, Erik Kristensen3
1Institute of Biogeochemistry and Pollutant Dynamics, Eidgenössische Technische Hochschule Zürich, 8092 Zürich, Switzerland; longhui.deng@usys.ethz.ch mark.lever@usys.ethz.ch.
Summary
Bioturbation by burrowing animals creates similar microbial communities in seafloor sediments. Dissolved oxygen and organic matter distribution driven by bioturbation control microbial structure, unlike in non-bioturbated areas.
Area of Science:
- Marine Ecology
- Geomicrobiology
- Biogeochemistry
Background:
- Bioturbation, a process driven by burrowing macrofauna, significantly alters seafloor habitats and influences global carbon cycling.
- The impact of bioturbation on the community structure of seafloor microorganisms remains largely unexplored.
Purpose of the Study:
- To investigate how bioturbation affects microbial community structure in continental margin sediments.
- To identify the key environmental drivers shaping microbial communities in bioturbated versus non-bioturbated environments.
Main Methods:
- Comparative analysis of microbial communities across geochemically and sedimentologically diverse continental margin sites.
- Geochemical analyses of solid and solute phases.
- Modeling of bioturbation activities.
- Assessment of dissolved oxygen and organic matter distribution.
Main Results:
- Microbial communities in bioturbated sediments were highly similar across different sites, contrasting sharply with those in non-bioturbated surface and subsurface sediments.
- Dissolved oxygen introduced by burrow ventilation was identified as the primary driver of archaeal community structure.
- Solid-phase reworking, controlling fresh algal organic matter distribution, was the main factor influencing bacterial community structure.
Conclusions:
- Bioturbation homogenizes microbial communities in seafloor sediments, with distinct drivers for archaeal and bacterial community structures.
- In non-bioturbated sediments, microbial communities exhibit greater divergence, primarily influenced by site-specific organic carbon sources.

