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Updated: Dec 17, 2025

Defining Substrate Specificities for Lipase and Phospholipase Candidates
Published on: November 23, 2016
Roles for a lipid phosphatase in the activation of its opposing lipid kinase
Bethany S Strunk1,2,3, Noah Steinfeld1,4, Sora Lee5
1Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Abstract:
Fig4 is a phosphoinositide phosphatase that converts PI3,5P2 to PI3P. Paradoxically, mutation of Fig4 results in lower PI3,5P2, indicating that Fig4 is also required for PI3,5P2 production. Fig4 promotes elevation of PI3,5P2, in part, through stabilization of a protein complex that includes its opposing lipid kinase, Fab1, and the scaffold protein Vac14. Here we show that multiple regions of Fig4 contribute to its roles in the elevation of PI3,5P2: its catalytic site, an N-terminal disease-related surface, and a C-terminal region. We show that mutation of the Fig4 catalytic site enhances the formation of the Fab1-Vac14-Fig4 complex, and reduces the ability to elevate PI3,5P2. This suggests that independent of its lipid phosphatase function, the active site plays a role in the Fab1-Vac14-Fig4 complex. We also show that the N-terminal disease-related surface contributes to the elevation of PI3,5P2 and promotes Fig4 association with Vac14 in a manner that requires the Fig4 C-terminus. We find that the Fig4 C-terminus alone interacts with Vac14 in vivo and retains some functions of full-length Fig4. Thus, a subset of Fig4 functions are independent of its phosphatase domain and at least three regions of Fig4 play roles in the function of the Fab1-Vac14-Fig4 complex.
Insights
Fig4 protein is crucial for producing PI3,5P2, a vital lipid. Multiple regions of Fig4, beyond its catalytic site, are essential for this production and for stabilizing key protein complexes.
Area of Science:
- Cellular Biology
- Molecular Biology
- Biochemistry
Background:
- Fig4 is a phosphoinositide phosphatase that metabolizes PI3,5P2.
- Mutations in Fig4 paradoxically lead to decreased PI3,5P2 levels, suggesting a role in its production.
- Fig4 stabilizes the Fab1-Vac14-Fig4 complex, which is critical for PI3,5P2 homeostasis.
Purpose of the Study:
- To investigate the specific roles of different Fig4 protein regions in PI3,5P2 production.
- To elucidate the contribution of Fig4's catalytic site, N-terminal surface, and C-terminal region to complex stabilization and lipid production.
- To understand how these regions interact within the Fab1-Vac14-Fig4 complex.
Main Methods:
- Site-directed mutagenesis of Fig4 protein regions (catalytic site, N-terminus, C-terminus).
- Analysis of PI3,5P2 levels in cells with mutated Fig4.
- In vivo interaction studies to assess complex formation (Fab1-Vac14-Fig4) and protein association (Fig4-Vac14).
Main Results:
- Mutation of the Fig4 catalytic site enhanced complex formation but impaired PI3,5P2 elevation, indicating a dual role.
- The N-terminal region is important for PI3,5P2 elevation and association with Vac14, requiring the C-terminus.
- The C-terminal region alone interacts with Vac14 and retains partial function of full-length Fig4.
Conclusions:
- Fig4 possesses functions beyond its lipid phosphatase activity, essential for PI3,5P2 production.
- At least three distinct regions of Fig4 (catalytic site, N-terminus, C-terminus) are integral to the Fab1-Vac14-Fig4 complex's function.
- These findings reveal a complex regulatory mechanism for PI3,5P2 homeostasis involving multiple domains of Fig4.
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