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Updated: Dec 17, 2025

Selected Reaction Monitoring Mass Spectrometry for Absolute Protein Quantification
Published on: August 17, 2015
Development of a generic reversed-phase liquid chromatography method for protein quantification using analytical
Julian Kopp1, Florian B Zauner2, Andreas Pell1
1Christian Doppler Laboratory for Mechanistic and Physiological Methods for Improved Bioprocesses, TU Wien, Gumpendorfer Straße 1a, 1060 Vienna, Austria.
A new reversed-phase liquid chromatography (RPLC) method allows fast and reliable quantification of recombinant proteins during biopharmaceutical production. This analytical tool aids in monitoring critical quality attributes for improved process control.
Area of Science:
- Biopharmaceutical manufacturing
- Analytical chemistry
- Protein biochemistry
Background:
- Biopharmaceutical drug substances require monitoring of critical quality attributes (CQAs) like protein titer and purity during production.
- Existing methods may lack the speed or robustness needed for real-time monitoring in upstream and downstream bioprocessing.
- Intracellular protein production in E. coli presents unique challenges for analytical quantification.
Purpose of the Study:
- To develop a novel, rapid, robust, and mass spectrometry-compatible reversed-phase liquid chromatography (RPLC) method.
- To enable accurate quantification and baseline resolution of target proteins during biopharmaceutical manufacturing.
- To establish a versatile method applicable to a broad range of intracellularly produced proteins.
Main Methods:
- Analytical Quality by Design (AQbD) workflow for method development.
- Selection of stationary phase to minimize protein adsorption and maximize efficiency.
- Optimization of gradient conditions and column temperature using chromatographic modeling.
- Method validation including linearity, limit of quantification, and repeatability.
- In-silico and experimental robustness testing using Design of Experiments (DoE).
Main Results:
- A novel RPLC method was successfully developed and validated for protein quantification.
- The method demonstrates high efficiency, robustness, and compatibility with mass spectrometry.
- Baseline resolution and quantification of target proteins were achieved.
- The method proved effective for monitoring protein titers in both upstream and downstream processing.
- Comparison against established methods confirmed its accuracy and reliability.
Conclusions:
- The developed RPLC method provides a versatile tool for rapid recombinant protein titer measurement.
- The AQbD approach offers a structured protocol for generating new analytical methods in biopharmaceutical development.
- This method facilitates improved process monitoring and control of critical quality attributes in biopharmaceutical manufacturing.
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