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Related Concept Videos

RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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Related Experiment Video

Updated: Dec 17, 2025

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Multi-tissue Siberian sturgeon RNA sequencing data.

Christophe Klopp1, Cédric Cabau2, André Lasalle3

  • 1INRAE, SIGENAE, MIAT UR875, F-31326, Castanet Tolosan, France, 'SIGENAE, GenPhySE, Université de Toulouse, INRAE, ENVT, F-31326, Castanet Tolosan, France.

Data in Brief
|June 30, 2020
PubMed
Summary

This study presents transcriptomic data for Siberian sturgeon (Acipenser baerii), a valuable and threatened species. This resource aids research into sturgeon physiology for conservation and aquaculture management.

Keywords:
Anterior-kidneyBrain-pituitary-gonad axisEmbryosKidneyLiverSiberian sturgeonStomachTranscriptomics

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Area of Science:

  • Aquatic biology
  • Genomics
  • Fisheries science

Background:

  • Siberian sturgeon (Acipenser baerii) is commercially important for flesh and caviar.
  • This species is currently threatened, necessitating conservation efforts.
  • Understanding sturgeon physiology is crucial for effective management.

Purpose of the Study:

  • To generate comprehensive transcriptomic data for Siberian sturgeon.
  • To cover key physiological processes including reproduction, development, growth, and feeding.
  • To support fundamental research and inform management strategies for wild and aquaculture populations.

Main Methods:

  • RNA sequencing (RNA-Seq) was performed on ten distinct tissues.
  • Tissues included brain, pituitary, kidney (anterior and posterior), stomach, liver, heart, embryonic, pre-larval, and immature gonads.
  • Samples were sourced from sex-differentiated fish aged 17-42 months and measuring 66-85 cm.

Main Results:

  • Transcriptomic data sets (RNA-Seq reads) were successfully generated for the specified tissues.
  • The data provides a molecular resource for studying various physiological functions in Siberian sturgeon.
  • This dataset represents a significant contribution to the genomic resources available for Acipenser baerii.

Conclusions:

  • The generated transcriptomic data is a valuable resource for advancing the understanding of Siberian sturgeon physiology.
  • This research will facilitate future studies on reproduction, development, and growth in this species.
  • The data will aid in developing improved management and conservation strategies for Siberian sturgeon populations.