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Updated: Dec 17, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
Dual phosphorylation of protein phosphatase PPM1H promotes dephosphorylation of Smad1 in cellulo
Jin Osawa1, Kazutoshi Akizuki2, Akari Kashimura1
1Department of Life Sciences, Faculty of Agriculture, Kagawa University, Kagawa, 761-0795, Japan.
Abstract:
Protein phosphatase PPM1H is known to participate in various biological or pathophysiological mechanisms. However, little is known about the molecular mechanisms of its regulation. In this study, we investigated the protein kinases that directly phosphorylate PPM1H, identifying them as cAMP-dependent protein kinase (PKA) and Ca2+/calmodulin-dependent protein kinase I (CaMKI). In vitro and in silico analyses showed that the phosphorylation sites of PPM1H by PKA and CaMKI were Ser-123 and Ser-210, respectively. The phosphorylation state of PPM1H in cells exhibited the kinase activator- and inhibitor-dependent changes. In mouse neuroblastoma Neuro2a cells, phosphorylation of Ser-210 was much higher in the phospho-mimetic mutant (S123D) than in the non-phosphorylatable mutant (S123A) when they were treated with ionomycin. This suggests that a hierarchical phosphorylation, with initial phosphorylation of Ser-123 promoting subsequent phosphorylation of Ser-210, occurs in these neuron-like cells. Moreover, in cell-based assay a PPM1H(S123A/S210A) double mutant barely dephosphorylated Smad1, a transcription factor known as an endogenous substrate of PPM1H. These results suggest that cAMP and Ca2+/calmodulin regulate dephosphorylation of Smad1 through the dual phosphorylation of PPM1H at Ser-123 and Ser-210.
Insights
cAMP-dependent protein kinase (PKA) and Ca2+/calmodulin-dependent protein kinase I (CaMKI) phosphorylate protein phosphatase PPM1H at Ser-123 and Ser-210, respectively. This dual phosphorylation regulates Smad1 dephosphorylation, linking cAMP and Ca2+ signaling to gene transcription.
Area of Science:
- Molecular Biology
- Cell Signaling
- Biochemistry
Background:
- Protein phosphatase PPM1H is implicated in diverse biological processes.
- The precise molecular mechanisms governing PPM1H regulation remain largely unelucidated.
Purpose of the Study:
- To identify the protein kinases responsible for PPM1H phosphorylation.
- To elucidate the functional consequences of PPM1H phosphorylation on its enzymatic activity.
Main Methods:
- In vitro kinase assays to identify direct PPM1H phosphorylating kinases.
- In silico analysis to predict and confirm phosphorylation sites.
- Cell-based assays using phospho-mimetic and non-phosphorylatable mutants.
- Western blot analysis to assess protein phosphorylation states.
Main Results:
- cAMP-dependent protein kinase (PKA) and Ca2+/calmodulin-dependent protein kinase I (CaMKI) were identified as direct PPM1H kinases.
- Serine residues Ser-123 and Ser-210 were identified as the specific phosphorylation sites for PKA and CaMKI, respectively.
- A hierarchical phosphorylation mechanism was observed, where Ser-123 phosphorylation facilitates Ser-210 phosphorylation.
- PPM1H phosphorylation at Ser-123 and Ser-210 is crucial for its ability to dephosphorylate Smad1.
Conclusions:
- cAMP and Ca2+ signaling pathways converge on PPM1H regulation through PKA and CaMKI.
- Dual phosphorylation of PPM1H at Ser-123 and Ser-210 is essential for its phosphatase activity towards Smad1.
- This regulatory mechanism provides a link between second messenger signaling and the regulation of transcription factors like Smad1.
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