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Selecting Multiple Biomarker Subsets with Similarly Effective Binary Classification Performances
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Feature Selection for High-Dimensional and Imbalanced Biomedical Data Based on Robust Correlation Based Redundancy

Garba Abdulrauf Sharifai1,2, Zurinahni Zainol2

  • 1Department of Computer Sciences, Yusuf Maitama Sule University, 700222 Kofar Nassarawa, Kano, Nigeria.

Genes
|July 2, 2020
PubMed
Summary
This summary is machine-generated.

Training machine learning models with imbalanced, high-dimensional data is difficult. A new method, Robust Correlation Based Redundancy and Binary Grasshopper Optimization Algorithm (rCBR-BGOA), improves classification performance on such datasets.

Keywords:
Grasshopper optimisation algorithmclass-imbalanced datasethigh dimensionalitymulti-filter

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Area of Science:

  • Machine Learning
  • Data Science
  • Bioinformatics

Background:

  • Training machine learning algorithms on imbalanced datasets with high dimensionality presents significant challenges.
  • These challenges are particularly pronounced in real-world applications like biomedical data analysis.
  • Existing methods often address either imbalanced data or high dimensionality, but rarely both simultaneously.

Purpose of the Study:

  • To propose a novel feature selection method to address the combined problem of high dimensionality and imbalanced classes.
  • To enhance classification performance for datasets with limited samples and numerous features.
  • To develop an effective approach for selecting discriminative features representing both minority and majority classes.

Main Methods:

  • A new method, Robust Correlation Based Redundancy and Binary Grasshopper Optimization Algorithm (rCBR-BGOA), was developed.
  • rCBR-BGOA utilizes an ensemble of multi-filters combined with the Correlation-Based Redundancy method for optimal feature subset selection.
  • A binary Grasshopper Optimization Algorithm (BGOA) was employed to frame feature selection as an optimization problem.

Main Results:

  • The proposed rCBR-BGOA method demonstrated improved classification performance.
  • Improvements were observed in key metrics such as G-mean and Area Under the Curve (AUC).
  • Statistical analysis supported the effectiveness of rCBR-BGOA on high-dimensional and imbalanced datasets.

Conclusions:

  • The rCBR-BGOA method effectively tackles the challenges of high-dimensional and imbalanced datasets.
  • This approach offers a promising solution for improving machine learning model performance in complex data scenarios.
  • The study highlights the potential of integrating feature selection with optimization algorithms for enhanced classification.