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Updated: Dec 16, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
The Intermediate Filament Synemin Regulates Non-Homologous End Joining in an ATM-Dependent Manner
Sara Sofia Deville1,2, Anne Vehlow1,3,4, Sarah Förster1,2
1OncoRay-National Center for Radiation Research in Oncology, Faculty of Medicine Carl Gustav Carus, Technische Universität Dresden, 01307 Dresden, Germany.
Abstract:
The treatment resistance of cancer cells is a multifaceted process in which DNA repair emerged as a potential therapeutic target. DNA repair is predominantly conducted by nuclear events; yet, how extra-nuclear cues impact the DNA damage response is largely unknown. Here, using a high-throughput RNAi-based screen in three-dimensionally-grown cell cultures of head and neck squamous cell carcinoma (HNSCC), we identified novel focal adhesion proteins controlling DNA repair, including the intermediate filament protein, synemin. We demonstrate that synemin critically regulates the DNA damage response by non-homologous end joining repair. Mechanistically, synemin forms a protein complex with DNA-PKcs through its C-terminal tail domain for determining DNA repair processes upstream of this enzyme in an ATM-dependent manner. Our study discovers a critical function of the intermediate filament protein, synemin in the DNA damage response, fundamentally supporting the concept of cytoarchitectural elements as co-regulators of nuclear events.
Insights
This study identifies synemin, an intermediate filament protein, as a key regulator of DNA repair in head and neck cancer. Synemin influences DNA repair processes, offering new therapeutic targets for cancer treatment resistance.
Area of Science:
- Cell Biology
- Molecular Oncology
- Biochemistry
Background:
- Cancer treatment resistance is a complex issue, with DNA repair pathways being a significant factor.
- While DNA repair is primarily nuclear, the influence of extra-nuclear factors on DNA damage response remains unclear.
Purpose of the Study:
- To identify novel proteins involved in DNA repair.
- To investigate the role of extra-nuclear cues in DNA damage response.
- To explore potential therapeutic targets for overcoming cancer treatment resistance.
Main Methods:
- High-throughput RNA interference (RNAi)-based screening was employed.
- Three-dimensionally cultured head and neck squamous cell carcinoma (HNSCC) cells were used.
- Protein complex formation and DNA repair mechanisms were analyzed.
Main Results:
- Novel focal adhesion proteins, including the intermediate filament protein synemin, were identified as regulators of DNA repair.
- Synemin was found to critically regulate the non-homologous end joining DNA repair pathway.
- Synemin forms a complex with DNA-PKcs, influencing DNA repair upstream in an ATM-dependent manner.
Conclusions:
- Synemin plays a crucial role in the DNA damage response.
- Intermediate filament proteins can act as co-regulators of nuclear events like DNA repair.
- This discovery provides a new understanding of cancer treatment resistance and potential therapeutic strategies.
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