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Updated: Dec 16, 2025

A Mass Spectrometry-Based Approach to Identify Phosphoprotein Phosphatases and their Interactors
Published on: April 29, 2022
Proteome analysis revealed the essential functions of protein phosphatase PP2A in the induction of Th9 cells
Suyasha Roy1, Renu Goel2, Suruchi Aggarwal2
1Immuno-Biology Laboratory, Translational Health Science and Technology Institute (THSTI), 3rd Milestone Gurgaon-Faridabad Expressway, Faridabad, Haryana, 121 001, India.
Abstract:
Proteomic analysis identifies post-translational functions of proteins, which remains obscure in transcriptomics. Given the important functions of Th9 cells in anti-tumor immunity, we performed proteome analysis of Th9 cells to understand the involvement of proteins that might be crucial for the anti-tumor functions of Th9 cells. Here we performed a comprehensive proteomic analysis of murine Th0 and Th9 cells, and identified proteins that are enriched in Th9 cells. Pathway analysis identified an abundance of phosphoproteins in the proteome of Th9 cells as compared to Th0 cells. Among upregulated phosphoproteins, Ppp2ca (catalytic subunit of protein phosphatase, PP2A) was found to be highly enriched in Th9 cells. Although the role of PP2A has been shown to regulate the differentiation and functions of Th1, Th2, Th17 and Tregs, its role in the differentiation and functions of Th9 cells is not identified yet. Here we found that PP2A is required for the induction of Th9 cells, as PP2A inhibition leads to the suppression of IL-9 and expression of key transcription factors of Th9 cells. PP2A inhibition abrogates Th9 cell-mediated anti-tumor immune response in B16-OVA melanoma tumor model. Thus, we report that PP2A is essential for the differentiation and anti-tumor functions of Th9 cells.
Insights
Protein phosphatase 2A (PP2A) is crucial for the development and anti-tumor activity of Th9 cells. Inhibiting PP2A impairs Th9 cell function and anti-tumor immunity, highlighting its essential role.
Area of Science:
- Immunology
- Proteomics
- Cell Biology
Background:
- Th9 cells play a critical role in anti-tumor immunity.
- Post-translational protein modifications are vital for cellular functions but often overlooked in transcriptomic studies.
- The specific role of protein phosphatase 2A (PP2A) in Th9 cell differentiation and function remains unclear.
Purpose of the Study:
- To investigate the proteomic landscape of Th9 cells.
- To identify proteins enriched in Th9 cells that contribute to their anti-tumor functions.
- To elucidate the role of PP2A in Th9 cell differentiation and anti-tumor immunity.
Main Methods:
- Comprehensive proteomic analysis of murine Th0 and Th9 cells.
- Pathway analysis to identify enriched protein classes, particularly phosphoproteins.
- Inhibition of PP2A activity to assess its impact on Th9 cell differentiation and function.
- Evaluation of Th9 cell-mediated anti-tumor immune response in a B16-OVA melanoma model.
Main Results:
- Proteomic analysis revealed proteins enriched in Th9 cells compared to Th0 cells.
- Th9 cells showed an abundance of phosphoproteins, with Ppp2ca (catalytic subunit of PP2A) being highly enriched.
- PP2A inhibition suppressed Interleukin-9 (IL-9) production and key transcription factor expression in Th9 cells.
- Inhibition of PP2A abrogated Th9 cell-mediated anti-tumor immune responses in a melanoma model.
Conclusions:
- PP2A is essential for the proper differentiation of Th9 cells.
- PP2A plays a critical role in mediating the anti-tumor immune functions of Th9 cells.
- Targeting PP2A may offer a therapeutic strategy to enhance anti-tumor immunity.
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