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Using Phage Display to Develop Ubiquitin Variant Modulators for E3 Ligases
Published on: August 27, 2021
[Targeting Cullin-RING E3 ligases for anti-cancer therapy: efforts on drug discovery]
Qing Yu1,2, Xiufang Xiong1,2, Yi Sun1,2
1Cancer Institute, the Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310009, China.
Abstract:
Cullin-RING E3 ligases (CRLs) are the major components of ubiquitin-proteasome system, responsible for ubiquitylation and subsequent degradation of thousands of cellular proteins. CRLs play vital roles in the regulation of multiple cellular processes, including cell cycle, cell apoptosis, DNA replication, signalling transduction among the others, and are frequently dysregulated in many human cancers. The discovery of specific neddylation inhibitors, represented by MLN4924, has validated CRLs as promising targets for anti-cancer therapies with a growing market. Recent studies have focused on the discovery of the CRLs inhibitors by a variety of approaches, including high through-put screen, virtual screen or structure-based drug design. The field is, however, still facing the major challenging, since CRLs are a large multi-unit protein family without typical active pockets to facilitate the drug design, and enzymatic activity is mainly dependent on undruggable protein-protein interactions and dynamic conformation changes. Up to now, most reported CRLs inhibitors are aiming at targeting the F-box family proteins (e.g., SKP2, β-TrCP and FBXW7), the substrate recognition subunit of SCF E3 ligases. Other studies reported few small molecule inhibitors targeting the UBE2M-DCN1 interaction, which specifically inhibits CRL3/CRL1 by blocking the cullin neddylation. On the other hand, several CRL activators have been reported, such as plant auxin and immunomodulatory imide drugs, thalidomide. Finally, proteolysis-targeting chimeras (PROTACs) has emerged as a new technology in the field of drug discovery, specifically targeting the undruggable protein-protein interaction. The technique connects the small molecule that selectively binds to a target protein to a CRL E3 via a chemical linker to trigger the degradation of target protein. The PROTAC has become a hotspot in the field of E3-ligase-based anti-cancer drug discovery.
Insights
Cullin-RING E3 ligases (CRLs) are crucial for protein degradation and cancer development. Inhibiting CRLs, particularly with novel PROTAC technology, offers a promising avenue for developing new anti-cancer drugs targeting these challenging protein interactions.
Area of Science:
- Biochemistry
- Molecular Biology
- Oncology
Background:
- Cullin-RING E3 ligases (CRLs) are central to the ubiquitin-proteasome system, regulating numerous cellular processes.
- Dysregulation of CRLs is implicated in various human cancers, making them attractive therapeutic targets.
- MLN4924, a neddylation inhibitor, has validated CRLs as druggable targets for cancer therapy.
Purpose of the Study:
- To review current strategies for discovering CRL inhibitors.
- To highlight challenges in CRL-targeted drug design due to their complex structure and interactions.
- To explore emerging therapeutic modalities like PROTACs for targeting CRLs.
Main Methods:
- Review of recent literature on CRL inhibitor discovery.
- Analysis of drug design approaches including high-throughput screening, virtual screening, and structure-based design.
- Discussion of proteolysis-targeting chimeras (PROTACs) as a novel therapeutic strategy.
Main Results:
- CRLs present significant drug design challenges due to their multi-unit nature and reliance on protein-protein interactions.
- Existing inhibitors primarily target F-box proteins or the UBE2M-DCN1 interaction.
- PROTACs offer a promising approach to target previously undruggable protein-protein interactions involving CRLs.
Conclusions:
- Targeting CRLs remains a key focus in cancer therapy development.
- Overcoming structural and dynamic challenges is crucial for effective CRL inhibitor design.
- PROTAC technology represents a significant advancement for E3 ligase-based anti-cancer drug discovery.
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