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Updated: Dec 15, 2025

A Semi-Automated and Reproducible Biological-Based Method to Quantify Calcium Deposition In Vitro
Published on: June 2, 2022
Network determinants of cardiovascular calcification and repositioned drug treatments
Euijun Song1, Rui-Sheng Wang1, Jane A Leopold2
1Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Abstract:
Ectopic cardiovascular calcification is a highly prevalent pathology for which there are no effective novel or repurposed pharmacotherapeutics to prevent disease progression. We created a human calcification endophenotype module (ie, the "calcificasome") by mapping vascular calcification genes (proteins) to the human vascular smooth muscle-specific protein-protein interactome (218 nodes and 632 edges, P < 10-5 ). Network proximity analysis was used to demonstrate that the calcificasome overlapped significantly with endophenotype modules governing inflammation, thrombosis, and fibrosis in the human interactome (P < 0.001). A network-based drug repurposing analysis further revealed that everolimus, temsirolimus, and pomalidomide are predicted to target the calcificasome. The efficacy of these agents in limiting calcification was confirmed experimentally by treating human coronary artery smooth muscle cells in an in vitro calcification assay. Each of the drugs affected expression or activity of their predicted target in the network, and decreased calcification significantly (P < 0.009). An integrated network analytical approach identified novel mediators of ectopic cardiovascular calcification and biologically plausible candidate drugs that could be repurposed to target calcification. This methodological framework for drug repurposing has broad applicability to other diseases.
Insights
Researchers identified a "calcificasome" network module in vascular calcification. Novel drug repurposing candidates, including everolimus, temsirolimus, and pomalidomide, were found to significantly reduce calcification in vitro.
Area of Science:
- Cardiovascular Biology
- Network Pharmacology
- Drug Discovery
Background:
- Ectopic cardiovascular calcification is a prevalent condition lacking effective treatments.
- Current therapeutic options for vascular calcification are limited.
- Novel strategies are needed to prevent or treat cardiovascular calcification progression.
Purpose of the Study:
- To identify a molecular network module associated with human vascular calcification.
- To discover novel drug candidates for repurposing to treat cardiovascular calcification.
- To validate the efficacy of predicted drugs in an in vitro calcification model.
Main Methods:
- Construction of a human calcification endophenotype module (calcificasome) using protein-protein interaction networks.
- Network proximity analysis to identify overlaps with inflammation, thrombosis, and fibrosis modules.
- Network-based drug repurposing analysis to predict candidate therapeutics.
- In vitro validation of drug efficacy using human coronary artery smooth muscle cells.
Main Results:
- The calcificasome module significantly overlapped with inflammation, thrombosis, and fibrosis networks.
- Everolimus, temsirolimus, and pomalidomide were predicted to target the calcificasome.
- These drugs significantly reduced in vitro calcification in human coronary artery smooth muscle cells.
- Drugs modulated their predicted network targets, confirming mechanism of action.
Conclusions:
- An integrated network approach successfully identified novel mediators of ectopic cardiovascular calcification.
- Everolimus, temsirolimus, and pomalidomide show promise as repurposed drugs for cardiovascular calcification.
- The developed methodological framework is applicable to drug repurposing for other diseases.
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