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Updated: Dec 15, 2025

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long non-coding RNA CCDC144NL-AS1 sponges miR-143-3p and regulates MAP3K7 by acting as a competing endogenous RNA in
Hao Fan1, Yugang Ge1, Xiang Ma1
1Department of General Surgery, the First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu Province, China.
Abstract:
Gastric cancer (GC) has been one of the most leading cause of cancer-death worldwide. Long non-coding RNAs (lncRNAs) have been found to be related with the carcinogenesis and the development of various cancers, including GC. However, there are still many GC-related lncRNAs functional roles and molecular mechanisms that have not yet been clearly studied. Herein, we report lncRNA CCDC144NL-AS1, which has not been explored in GC, and it is markedly upregulated in GC tissues, which may serve as an independent predictor of poor prognosis. We found that CCDC144NL-AS1 expression was significantly positively associated with a larger tumor size and more pronounced lymph node metastasis. Through a series of in vivo and in vitro functional experiments, we observed that CCDC144NL-AS1 could facilitate cell proliferation, invasion and migration and inhibit cell apoptosis in GC. Further mechanism investigation revealed that CCDC144NL-AS1 acted as a competing endogenous RNA (ceRNA) for sponging miR-143-3p and upregulated the expression of its direct endogenous target MAP3K7 in GC. Taken together, our results elucidate the oncogenic roles of CCDC144NL-AS1/miR-143-3p/MAP3K7 axis in GC progression, providing inspiration for further understanding of the mechanism of GC and making CCDC144NL-AS1 as a potential novel diagnostic and therapeutic target for GC.
Insights
Long non-coding RNA CCDC144NL-AS1 promotes gastric cancer (GC) progression by regulating the miR-143-3p/MAP3K7 axis. This finding highlights CCDC144NL-AS1 as a potential diagnostic and therapeutic target for GC.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Gastric cancer (GC) remains a leading cause of cancer mortality globally.
- Long non-coding RNAs (lncRNAs) are implicated in cancer development, but their roles in GC require further elucidation.
- The lncRNA CCDC144NL-AS1 has not been previously studied in the context of GC.
Purpose of the Study:
- To investigate the functional role and molecular mechanism of lncRNA CCDC144NL-AS1 in gastric cancer.
- To determine if CCDC144NL-AS1 can serve as a prognostic biomarker for GC.
- To explore the potential of the CCDC144NL-AS1/miR-143-3p/MAP3K7 axis as a therapeutic target in GC.
Main Methods:
- Quantitative real-time PCR to assess CCDC144NL-AS1 expression in GC tissues.
- In vivo and in vitro functional assays (proliferation, migration, invasion, apoptosis).
- Mechanism investigation involving RNA immunoprecipitation and Western blotting to confirm the ceRNA activity and target interactions.
Main Results:
- CCDC144NL-AS1 was significantly upregulated in GC tissues and associated with larger tumor size and lymph node metastasis.
- CCDC144NL-AS1 overexpression promoted GC cell proliferation, invasion, and migration while inhibiting apoptosis.
- CCDC144NL-AS1 functions as a competing endogenous RNA (ceRNA) by sponging miR-143-3p, thereby upregulating MAP3K7 expression.
Conclusions:
- The CCDC144NL-AS1/miR-143-3p/MAP3K7 axis plays a crucial oncogenic role in gastric cancer progression.
- CCDC144NL-AS1 is a potential independent predictor of poor prognosis in GC patients.
- Targeting the CCDC144NL-AS1 axis offers a promising strategy for novel GC diagnostics and therapeutics.
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