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Updated: Dec 15, 2025

Murine Fecal Isolation and Microbiota Transplantation
Published on: May 26, 2023
The use of fecal microbiota transplant in sepsis
Robert Keskey1, Jennifer T Cone2, Jennifer R DeFazio3
1Section of General Surgery, Department of Surgery, University of Chicago, Chicago, Illinois.
Abstract:
Sepsis is defined as a dysregulated inflammatory response, which ultimately results from a perturbed interaction of both an altered immune system and the biomass and virulence of involved pathogens. This response has been tied to the intestinal microbiota, as the microbiota and its associated metabolites play an essential role in regulating the host immune response to infection. In turn, critical illness as well as necessary health care treatments result in a collapse of the intestinal microbiota diversity and a subsequent loss of health-promoting short chain fatty acids, such as butyrate, leading to the development of a maladaptive pathobiome. These perturbations of the microbiota contribute to the dysregulated immune response and organ failure associated with sepsis. Several case series have reported the ability of fecal microbiota transplant (FMT) to restore the host immune response and aid in recovery of septic patients. Additionally, animal studies have revealed the mechanism of FMT rescue in sepsis is likely related to the ability of FMT to restore butyrate producing bacteria and alter the innate immune response aiding in pathogen clearance. However, several studies have reported lethal complications associated with FMT, including bacteremia. Therefore, FMT in the treatment of sepsis is and should remain investigational until a more detailed mechanism of how FMT restores the host immune response in sepsis is determined, allowing for the development of more fine-tuned microbiota therapies.
Insights
Fecal microbiota transplant (FMT) shows promise for sepsis by restoring gut bacteria and immune response. However, potential lethal complications mean FMT remains investigational for sepsis treatment.
Area of Science:
- Microbiology
- Immunology
- Gastroenterology
Background:
- Sepsis involves a dysregulated inflammatory response linked to gut microbiota alterations.
- Critical illness and treatments disrupt gut microbiota diversity and beneficial metabolites like butyrate, creating a pathobiome.
- This pathobiome contributes to sepsis-induced immune dysfunction and organ failure.
Purpose of the Study:
- To explore the potential of fecal microbiota transplant (FMT) in treating sepsis.
- To understand the mechanisms by which FMT may restore immune response and aid sepsis recovery.
- To highlight the investigational nature of FMT for sepsis due to potential risks.
Main Methods:
- Review of case series and animal studies on FMT in sepsis.
- Analysis of FMT's impact on gut microbiota composition and host immune response.
- Examination of reported complications associated with FMT.
Main Results:
- Case series suggest FMT can restore immune response and aid sepsis recovery.
- Animal studies indicate FMT may restore butyrate-producing bacteria and modulate innate immunity for pathogen clearance.
- Studies also report lethal complications, including bacteremia, with FMT.
Conclusions:
- FMT shows potential therapeutic benefits in sepsis by modulating the gut microbiota and immune system.
- Restoration of butyrate-producing bacteria and alteration of innate immunity are proposed mechanisms.
- FMT for sepsis requires further investigation to understand mechanisms and mitigate risks like bacteremia before clinical application.

