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Identification of Circular RNAs using RNA Sequencing
Published on: November 14, 2019
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Identification of the Potential Key Circular RNAs in Elderly Patients With Postoperative Cognitive Dysfunction
Rui Gao1, Chan Chen1, Qi Zhao1
1Department of Anesthesiology and Translational Neuroscience Center, West China Hospital, Sichuan University, Chengdu, China.
Frontiers in Aging Neuroscience
|July 14, 2020
Summary
Circular RNAs (circRNAs) show differential expression in patients with postoperative cognitive dysfunction (POCD). This study identifies potential biomarkers for POCD, offering new insights into its molecular mechanisms.
Area of Science:
- Molecular Biology
- Genomics
- Biochemistry
Background:
- Postoperative cognitive dysfunction (POCD) is a severe complication impacting elderly patients' quality of life and survival.
- The molecular mechanisms and diagnostic biomarkers for POCD remain largely unknown.
- Circular RNAs (circRNAs), stable non-coding RNAs, are emerging biomarkers, but their role in POCD is unclear.
Purpose of the Study:
- To investigate differentially expressed circRNAs in serum from POCD patients.
- To explore the potential role of circRNAs in POCD development.
- To identify potential circRNA-based biomarkers for POCD.
Main Methods:
- Serum samples from POCD and non-POCD patients were analyzed using circRNA microarray.
- Quantitative real-time polymerase chain reaction (qRT-PCR) validated microarray findings.
- Bioinformatic analyses, including circRNA-miRNA-mRNA network construction and GO/KEGG pathway analysis, were performed.
Main Results:
- Microarray analysis identified 210 differentially expressed circRNAs (133 upregulated, 77 downregulated) in POCD patients.
- qRT-PCR confirmed differential expression of 10 circRNAs, with hsa_circRNA_001145, hsa_circRNA_101138, and hsa_circRNA_061570 showing the most significant changes.
- Gene Ontology and KEGG analyses indicated associations with nervous system development and MAPK/RAS signaling pathways.
Conclusions:
- This study reveals a distinct circRNA expression profile in POCD patients.
- Identified circRNAs represent potential diagnostic or prognostic biomarkers for POCD.
- Further research is warranted to explore the therapeutic potential of these circRNAs in POCD.
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