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A Rat Methyl-Seq Platform to Identify Epigenetic Changes Associated with Stress Exposure
Published on: October 24, 2018
Leveraging the urban-rural divide for epigenetic research
Héléne T Cronjé1, Hannah R Elliott2,3, Cornelie Nienaber-Rousseau1
1Centre of Excellence for Nutrition, North-West University, Potchefstroom Campus, Potchefstroom, 2520, North-West Province, South Africa.
Urbanization increases noncommunicable diseases (NCDs) partly via epigenetic changes like DNA methylation (DNAm). This review assesses study designs to explore DNAm
Area of Science:
- Environmental Epigenetics
- Epidemiology
- Noncommunicable Diseases (NCDs)
Background:
- Urbanization is linked to increased NCDs, potentially mediated by epigenetic changes such as DNA methylation (DNAm).
- Environmental exposures differ significantly between urban and rural settings, creating a unique context to study DNAm.
- Understanding these links is crucial for public health, especially in developing nations.
Purpose of the Study:
- To review epidemiological study designs for investigating the role of DNAm in the urbanization-NCD association.
- To evaluate how different designs address complex, clustered environmental exposures in urban vs. rural settings.
- To identify research strategies for developing countries utilizing demographic variations.
Main Methods:
- Review of three epidemiological study designs: migration, income-comparative, and urban-rural.
- Analysis of each design's capacity to investigate DNAm as a mediator between urbanization and NCDs.
- Discussion of how designs address knowledge gaps concerning methylation-mediated risk from combined exposures.
Main Results:
- Migration, income-comparative, and urban-rural designs offer distinct advantages for studying urbanization's impact on DNAm and NCDs.
- Urban-rural designs are particularly suited for examining the effects of clustered environmental exposures.
- Each design has limitations in fully elucidating complex methylation patterns.
Conclusions:
- Epidemiological study designs vary in their ability to unravel the DNAm-mediated links between urbanization and NCDs.
- Urban-rural comparative studies are valuable for understanding methylation changes due to distinct environmental exposures.
- Future research should leverage these designs, especially in developing countries, to address complex epigenetic contributions to NCDs.
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