Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Hybridization of Atomic Orbitals I03:24

Hybridization of Atomic Orbitals I

64.1K
The mathematical expression known as the wave function, ψ, contains information about each orbital and the wavelike properties of electrons in an isolated atom. When atoms are bound together in a molecule, the wave functions combine to produce new mathematical descriptions that have different shapes. This process of combining the wave functions for atomic orbitals is called hybridization and is mathematically accomplished by the linear combination of atomic orbitals. The new orbitals that...
64.1K
Molecular Orbital Theory II03:51

Molecular Orbital Theory II

26.1K
Molecular Orbital Energy Diagrams
26.1K
Lewis Structures of Molecular Compounds and Polyatomic Ions02:54

Lewis Structures of Molecular Compounds and Polyatomic Ions

43.7K
To draw Lewis structures for complicated molecules and molecular ions, it is helpful to follow a step-by-step procedure as outlined:
43.7K
Valence Bond Theory02:45

Valence Bond Theory

48.5K
Overview of Valence Bond Theory
48.5K
Valence Bond Theory02:42

Valence Bond Theory

10.8K
Coordination compounds and complexes exhibit different colors, geometries, and magnetic behavior, depending on the metal atom/ion and ligands from which they are composed. In an attempt to explain the bonding and structure of coordination complexes, Linus Pauling proposed the valence bond theory, or VBT, using the concepts of hybridization and the overlapping of the atomic orbitals. According to VBT, the central metal atom or ion (Lewis acid) hybridizes to provide empty orbitals of suitable...
10.8K
VSEPR Theory and the Effect of Lone Pairs04:01

VSEPR Theory and the Effect of Lone Pairs

51.3K
Effect of Lone Pairs of Electrons on Molecule Geometry
51.3K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Hierarchical Truncations for Many-Body Expansion Potentials.

Journal of chemical theory and computation·2026
Same author

Speeding Up Hartree-Fock in JuliaChem with Density Fitting.

Journal of chemical theory and computation·2026
Same author

Multiscale Modeling of Transport-Mediated Catalytic Reactions in Linear Nanopores: PNB Conversion in MSN.

Journal of chemical theory and computation·2026
Same author

Solvent Effects on Nonadiabatic Coupling: Interfacing Time-Dependent Density Functional Theory with the Effective Fragment Potential Method.

Journal of chemical theory and computation·2026
Same author

Atoms and Bonds as Synergisms of Interacting Electrons and Nuclei. The Origin of Chemical Bonds in Polyatomic Molecules.

Journal of the American Chemical Society·2025
Same author

Decrypting the Unusual Structure and σ-Hole Interactions of the XC(NO<sub>2</sub>)<sub>3</sub> (X=F, Cl, Br, and I) Compounds Using Quasi-Atomic Orbitals.

Molecules (Basel, Switzerland)·2025

Related Experiment Video

Updated: Dec 15, 2025

From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding
06:44

From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding

Published on: March 24, 2018

69.5K

Why is Si2H2 Not Linear? An Intrinsic Quasi-Atomic Bonding Analysis.

Emilie B Guidez1, Mark S Gordon2, Klaus Ruedenberg2

  • 1Department of Chemistry, University of Colorado Denver, Denver, Colorado 80204, United States.

Journal of the American Chemical Society
|July 15, 2020
PubMed
Summary

Silicon and carbon acetylene isomers exhibit distinct energy preferences. For Si2H2, unfavorable intra-atomic energy changes dominate, unlike C2H2 where bonding interactions prevail, dictating molecular structure.

More Related Videos

Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics
13:58

Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics

Published on: September 28, 2016

12.1K
The Synthesis of [Sn10SiSiMe334]2- Using a Metastable SnI Halide Solution Synthesized via a Co-condensation Technique
12:43

The Synthesis of [Sn10SiSiMe334]2- Using a Metastable SnI Halide Solution Synthesized via a Co-condensation Technique

Published on: November 28, 2016

8.9K

Related Experiment Videos

Last Updated: Dec 15, 2025

From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding
06:44

From Molecules to Materials: Engineering New Ionic Liquid Crystals Through Halogen Bonding

Published on: March 24, 2018

69.5K
Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics
13:58

Probing C84-embedded Si Substrate Using Scanning Probe Microscopy and Molecular Dynamics

Published on: September 28, 2016

12.1K
The Synthesis of [Sn10SiSiMe334]2- Using a Metastable SnI Halide Solution Synthesized via a Co-condensation Technique
12:43

The Synthesis of [Sn10SiSiMe334]2- Using a Metastable SnI Halide Solution Synthesized via a Co-condensation Technique

Published on: November 28, 2016

8.9K

Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Molecular Spectroscopy

Background:

  • Acetylene (C2H2) and its silicon analog (Si2H2) are valence isoelectronic molecules.
  • The relative stability of different geometric isomers (dibridged, trans-bent, linear) varies between C2H2 and Si2H2.
  • Understanding energy contributions is key to explaining structural preferences.

Purpose of the Study:

  • To analyze the intra-atomic and inter-atomic energy contributions to the molecular energy of C2H2 and Si2H2.
  • To elucidate the differing energetic preferences of geometric isomers in Si2H2 compared to C2H2.
  • To relate intra-atomic energy changes to heavy atom hybridization.

Main Methods:

  • Computation of molecular energies for various geometric structures of Si2H2 and C2H2.
  • Analysis of density matrices from multiconfiguration self-consistent field (MCSCF) wave functions.
  • Expression of density matrices in terms of quasi-atomic orbitals to separate intra-atomic and inter-atomic contributions.

Main Results:

  • Molecular energy increases in the order dibridged < trans-bent < linear for Si2H2, unlike C2H2 where linear is the global minimum.
  • Intra-atomic contributions become less favorable, while inter-atomic bonding contributions become more favorable in the order dibridged → trans-bent → linear for both molecules.
  • For Si2H2, unfavorable intra-atomic energy changes outweigh bonding interactions, while for C2H2, bonding interactions dominate over intra-atomic changes.

Conclusions:

  • The differing stability of Si2H2 isomers is attributed to the prevalence of intra-atomic antibonding energy changes over interatomic bonding contributions.
  • In contrast, C2H2's stability is governed by the dominance of interatomic bonding interactions over intra-atomic energy changes.
  • Intra-atomic energy changes in these systems are analogous to the hybridization changes observed in methane (CH4).