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CDK4/6 regulate lysosome biogenesis through TFEB/TFE3.

Qiuyuan Yin1, Youli Jian2, Meng Xu2

  • 1State Key Laboratory of Conservation and Utilization of Bio-Resources in Yunnan and Center for Life Science, School of Life Sciences, Yunnan University, Kunming, China.

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Cyclin-dependent kinases CDK4/6 control lysosome numbers during cell division by regulating TFEB/TFE3 activity. Inhibiting CDK4/6 boosts lysosome biogenesis, impacting cancer and lysosomal disorder therapies.

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Area of Science:

  • Cell Biology
  • Molecular Biology
  • Biochemistry

Background:

  • Lysosomes are crucial organelles for cellular degradation and signaling.
  • Lysosome biogenesis adapts to cellular needs, but its regulation during the cell cycle remains unclear.
  • Understanding cell cycle-dependent lysosome regulation is vital for cellular homeostasis.

Purpose of the Study:

  • To investigate the role of cyclin-dependent kinases CDK4/6 in regulating lysosome biogenesis during the cell cycle.
  • To identify the molecular mechanisms by which CDK4/6 influence lysosome numbers.
  • To explore the therapeutic potential of targeting this pathway in diseases.

Main Methods:

  • Utilized chemical and genetic inactivation of CDK4/6.
  • Investigated the interaction and phosphorylation of transcription factors TFEB and TFE3 by CDK4/6.
  • Analyzed lysosomal numbers and TFEB/TFE3 localization during different cell cycle phases.

Main Results:

  • CDK4/6 inactivation led to increased lysosomal numbers.
  • CDK4/6 were found to interact with and phosphorylate TFEB/TFE3 in the nucleus, promoting their cytoplasmic shuttling.
  • Lysosome numbers increased during S and G2/M phases, correlating with diminished CDK4/6 activity due to cyclin D turnover.
  • Discovered a novel mechanism controlling TFEB/TFE3 nuclear export and lysosome biogenesis.

Conclusions:

  • CDK4/6 are key regulators of lysosome biogenesis in the cell cycle.
  • The CDK4/6-TFEB/TFE3 axis provides a molecular link between cell cycle progression and lysosome adaptation.
  • CDK4/6 inhibitors enhance autophagy and lysosome-dependent degradation, suggesting therapeutic applications for cancer and lysosomal disorders.