Related Experiment Video
Updated: Dec 15, 2025

Isotopic Effect in Double Proton Transfer Process of Porphycene Investigated by Enhanced QM/MM Method
Published on: July 19, 2019
One- and Two-Proton Transfer Mechanisms Coexist in One Active Site
Yueqi Zhao1, Huaikun Dong1, Jing Ren1
1School of Biological Science and Technology, University of Jinan, Jinan 250022, China.
Salicylic acid binding protein 2 (SABP2) uses distinct mechanisms to activate plant defense compounds like Acibenzolar-S-methyl (ASM). This research clarifies enzyme promiscuity and aids in designing new plant activators.
Area of Science:
- Biochemistry
- Plant Science
- Computational Chemistry
Background:
- Acibenzolar-S-methyl (ASM) is a key commercial plant activator for systemic acquired resistance (SAR).
- The precise catalytic mechanism of ASM hydrolysis by salicylic acid binding protein 2 (SABP2) has remained unclear.
- Understanding enzyme-substrate interactions is crucial for plant defense mechanisms.
Purpose of the Study:
- To elucidate the fundamental catalytic mechanism of SABP2-mediated hydrolysis of ASM.
- To investigate the differences in SABP2's catalytic mechanisms with varying substrates.
- To provide insights for the development of next-generation plant SAR activators.
Main Methods:
- Quantum Mechanics/Molecular Mechanics (QM/MM) simulations.
- Charge transfer analysis.
- Small-molecule synthesis and biochemical assays (HPLC).
Main Results:
- SABP2 employs a two-proton transfer mechanism for ASM hydrolysis, with charge transfer stabilizing the intermediate.
- For ASM analogue BTM, SABP2 uses a one-proton transfer mechanism, stabilizing the tetrahedral intermediate via electrostatic effects.
- Computational findings were validated by comparable HPLC analyses of SABP2 esterase activity.
Conclusions:
- SABP2 exhibits catalytic promiscuity, utilizing distinct mechanisms for different substrates.
- The study clarifies enzyme catalytic mechanisms and provides a foundation for designing novel plant SAR activators.
- This research advances the understanding of enzyme function and plant immune responses.
More Related Videos
14:37Modeling an Enzyme Active Site using Molecular Visualization Freeware
Published on: December 25, 2021
11:04Ion Mobility-Mass Spectrometry Techniques for Determining the Structure and Mechanisms of Metal Ion Recognition and Redox Activity of Metal Binding Oligopeptides
Published on: September 7, 2019
Related Concept Videos
ATP Synthase: Mechanism
ATP Driven Pumps I: An Overview
There are four main types of ATP-driven pumps - P-type, V-type, F-type, and ABC transporter. All these pumps are of varying complexities and...
Primary Active Transport
Primary Active Transport
Allosteric Proteins-ATCase
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
ATP Synthase: Structure