Discovery of M Protease Inhibitors Encoded by SARS-CoV-2

Hui-Chen Hung1, Yi-Yu Ke1, Sheng Yu Huang2

  • 1Institute of Biotechnology and Pharmaceutical Research, National Health Research Institutes, Miaoli, Taiwan.

Insights

GC376 effectively inhibits SARS-CoV-2 replication by targeting the viral main protease (Mpro). Further optimization of GC376 is recommended for human therapeutic development against COVID-19.

Area of Science:

  • Virology
  • Drug Discovery
  • Biochemistry

Background:

  • The COVID-19 pandemic, caused by SARS-CoV-2, poses a significant global health challenge.
  • The viral main protease (Mpro) is a critical therapeutic target for developing antiviral drugs.
  • Picornavirus-like supercluster Mpro inhibitors offer a potential avenue for SARS-CoV-2 drug development.

Purpose of the Study:

  • To evaluate the efficacy of GC376, a broad-spectrum Mpro inhibitor, against SARS-CoV-2.
  • To investigate the inhibitory mechanism and potential for optimization of GC376 for human use.

Main Methods:

  • In vitro assays to determine the half-maximum inhibitory concentration (IC50) of GC376 against SARS-CoV-2 Mpro.
  • Cell-based assays to measure the half-maximum effective concentration (EC50) of GC376 against SARS-CoV-2 replication.
  • Mass spectrometry to analyze the covalent modification of SARS-CoV-2 Mpro by GC376.
  • Molecular docking to understand the binding interactions of GC376 within the Mpro active site.

Main Results:

  • GC376 demonstrated potent inhibition of SARS-CoV-2 Mpro with an IC50 of 26.4 ± 1.1 nM.
  • GC376 effectively inhibited SARS-CoV-2 replication with an EC50 of 0.91 ± 0.03 μM.
  • Mass spectrometry revealed limited covalent modification of Mpro by GC376, suggesting room for improvement.
  • Molecular docking provided insights into GC376's binding mode, guiding optimization strategies.

Conclusions:

  • GC376 is a potent inhibitor of SARS-CoV-2 Mpro and exhibits antiviral activity.
  • Further optimization of GC376 or its analogues is warranted for enhanced efficacy and covalent modification.
  • Given its existing safety profile as a veterinary drug, expedited development of GC376 for human COVID-19 treatment is recommended.