Related Experiment Video
Updated: Dec 14, 2025

Using Scaffold Liposomes to Reconstitute Lipid-proximal Protein-protein Interactions In Vitro
Published on: January 11, 2017
Molecular basis for the MacroD1-mediated hydrolysis of ADP-ribosylation
Xiaoyun Yang1, Yinliang Ma1, Yimiao Li1
1College of Life Science, Institute of Life Science and Green Development, Hebei University, Baoding, 071000, Hebei, PR China.
Abstract:
MacroD1 is an enzyme that hydrolyzes protein mono-ADP-ribosylation. However, the key catalytic residues of MacroD1 in these biochemical reactions remain elusive. Here, we present the crystal structure of MacroD1 in a complex with ADP-ribose (ADPR). The β5-α10-loop functions as a switch loop to mediate substrate recognition and right orientation. The conserved Phe272 in the β5-α10-loop plays a crucial role in the orientation of ADPR distal ribose, and a conserved hydrogen-bond network contributes significantly to hold and orient the catalytic water12, which mediates ADPR hydrolysis. Moreover, we found that MacroD1 was recruited to the sites of DNA damage via recognition of ADP-ribosylation at DNA lesions. The MacroD1-mediated ADPR hydrolysis is essential for DNA damage repair. Taken together, our study provides structural and functional insights into the molecular mechanism of MacroD1-mediated ADPR hydrolysis and its role in DNA damage repair.
Insights
MacroD1 enzyme activity in DNA repair is revealed. Structural insights show how MacroD1 hydrolyzes ADP-ribosylation, essential for repairing DNA damage.
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- MacroD1 is an enzyme catalyzing protein mono-ADP-ribosylation hydrolysis.
- The precise catalytic residues and mechanism of MacroD1 remain unclear.
Purpose of the Study:
- To elucidate the structural basis of MacroD1's catalytic activity.
- To investigate MacroD1's role in DNA damage repair.
Main Methods:
- X-ray crystallography of MacroD1 in complex with ADP-ribose (ADPR).
- Biochemical assays to assess enzyme function and substrate interaction.
Main Results:
- The crystal structure reveals the β5-α10-loop acts as a switch for substrate recognition.
- Conserved residue Phe272 and a hydrogen-bond network are critical for ADPR hydrolysis.
- MacroD1 is recruited to DNA damage sites and facilitates DNA repair through ADPR hydrolysis.
Conclusions:
- MacroD1's structure provides insights into its ADP-ribosylation hydrolysis mechanism.
- MacroD1 plays a vital role in DNA damage repair by hydrolyzing ADP-ribosylation marks.
More Related Videos
12:43Genetic and Biochemical Approaches for In Vivo and In Vitro Assessment of Protein Oligomerization: The Ryanodine Receptor Case Study
Published on: July 27, 2016
06:47High-throughput Measurement of Dictyostelium discoideum Macropinocytosis by Flow Cytometry
Published on: September 10, 2018
Related Concept Videos
IP3/DAG Signaling Pathway
RNA Editing
GPCRs Regulate Adenylyl Cylase Activity
ATP and Macromolecule Synthesis
Most macromolecules are composed of single subunits, or building blocks, called monomers. The monomers combine with each other using covalent bonds to form larger molecules known as polymers.
Conversion of...
Phosphoinositides and PIPs
Different phosphoinositides are synthesized and recruited on the cytosolic face of the plasma membrane. The localization of specific phosphoinositides concentrated in separate membrane...