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Updated: Dec 14, 2025

Chromatin Immunoprecipitation ChIP to Assay Dynamic Histone Modification in Activated Gene Expression in Human Cells
Published on: July 29, 2010
Histone H3.3 phosphorylation amplifies stimulation-induced transcription
Anja Armache1,2, Shuang Yang3, Alexia Martínez de Paz1
1Laboratory of Epigenetics and Immunity, Department of Pathology and Laboratory Medicine, Weill Cornell Medicine, New York, NY, USA.
Histone variant H3.3 phosphorylation (H3.3S31ph) at Ser31 enables rapid gene induction in macrophages. This mark recruits transcription factors and ejects repressors, facilitating faster gene activation.
Area of Science:
- Molecular Biology
- Epigenetics
- Cellular Biology
Background:
- Gene induction in complex organisms relies on chromatin regulation.
- Histone variant H3.3 is enriched in dynamically regulated chromatin.
- Mechanisms enabling rapid, high-level transcription at induced genes remain unclear.
Purpose of the Study:
- To investigate the role of histone variant H3.3 in rapid gene induction.
- To identify specific features of H3.3 that facilitate transcription.
- To elucidate the molecular mechanisms underlying stimulation-responsive gene regulation.
Main Methods:
- Analysis of histone modifications in mouse macrophages.
- Mass spectrometry to identify interacting proteins.
- Chromatin immunoprecipitation to assess histone variant localization.
Main Results:
- Phosphorylation of H3.3 at Serine 31 (H3.3S31ph) occurs on rapidly induced genes.
- H3.3S31ph selectively engages histone methyltransferase SETD2.
- H3.3S31ph facilitates the ejection of elongation corepressor ZMYND11.
Conclusions:
- H3.3S31ph is a key mark for stimulation-responsive genes.
- This phosphorylation provides preferential access for the transcription apparatus.
- Dedicated mechanisms involving H3.3 phosphorylation regulate rapid transcription.
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