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Updated: Dec 13, 2025

Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
Identification of Genetic Variants Associated With Myocardial Infarction in Saudi Arabia
Kamal W Ai-Ghalayini1, Mohammed A Salama2, Hadia Bassam Al Mahdi3
1Department of Internal Medicine, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia. kalghalayini@kau.edu.sa.
Genetic variants linked to myocardial infarction (MI) were investigated in Saudi patients. The A allele of rs11591147 was found to decrease MI risk, suggesting its protective role in the Saudi population.
Area of Science:
- Genetics
- Cardiovascular Disease Research
- Population Health
Background:
- Genetic variants contributing to various disorders remain underexplored in Saudi Arabia.
- Six specific single nucleotide polymorphisms (SNPs) associated with coronary artery disease or myocardial infarction (MI) were selected for investigation.
- These SNPs include rs5174 (LRP8), rs11591147 (PCSK9), rs2259816 (HNF1A), rs111245230 (SVEP1), rs3782886 (BRAP), and rs2259820 (HNF1A).
Purpose of the Study:
- To identify and analyze the frequency of specific genetic variants associated with myocardial infarction (MI) in the Saudi population.
- To evaluate the potential of these variants as predictive risk factors for MI in Saudi individuals.
- To assess the association between selected SNPs and the risk of developing MI.
Main Methods:
- Utilized a polymerase chain reaction (PCR) panel combined with mini-sequencing (SNapShot multiplex system) for variant identification.
- Analyzed allele frequencies of six reference SNPs in 100 MI patients and 103 healthy Saudi controls.
- Investigated the genetic variants rs5174, rs11591147, rs2259816, rs111245230, rs3782886, and rs2259820.
Main Results:
- The A allele of the rs11591147 variant demonstrated a protective effect, correlating with a reduced risk of MI in the Saudi cohort.
- The rare allele (C) of the rs111245230 variant was found to be extremely infrequent in the study population.
- The rare allele (G) of the rs3782886 variant was absent in the Saudi population's ethnic profile.
Conclusions:
- The study identified a specific genetic variant (rs11591147) potentially offering protection against myocardial infarction in Saudi individuals.
- The genetic landscape of MI risk in the Saudi population shows unique characteristics, with certain rare alleles being absent or infrequent.
- The SNapShot multiplex system is effective for predicting risk factors associated with severe diseases in specific ethnic groups like the Saudi population.
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