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Updated: Dec 13, 2025

Spontaneous Murine Model of Anaplastic Thyroid Cancer
Published on: February 3, 2023
Clinicopathologic features of kinase fusion-related thyroid carcinomas: an integrative analysis with molecular
Ying-Hsia Chu1, Lori J Wirth2, Alexander A Farahani1
1Departments of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA.
Abstract:
The discovery of actionable kinase gene rearrangements has revolutionized the therapeutic landscape of thyroid carcinomas. Unsolved challenges include histopathologic recognition of targetable cases, correlation between genotypes and tumor behavior, and evolving resistance mechanisms against kinase inhibitors (KI). We present 62 kinase fusion-positive thyroid carcinomas (KFTC), including 57 papillary thyroid carcinomas (PTC), two poorly differentiated thyroid carcinomas (PDTC), two undifferentiated thyroid carcinomas (ATC), and one primary secretory carcinoma (SC), in 57 adults and 5 adolescents. Clinical records, post-operative histology, and molecular profiles were reviewed. Histologically, all KFTC showed multinodular growth with prominent intratumoral fibrosis. Lymphovascular invasion (95%), extrathyroidal extension, gross and microscopic (63%), and cervical lymph node metastasis (79%) were common. Several kinase fusions were identified: STRN-ALK, EML4-ALK, AGK-BRAF, CUL1-BRAF, MKRN1-BRAF, SND1-BRAF, TTYH3-BRAF, EML4-MET, TFG-MET, IRF2BP2-NTRK1, PPL-NTRK1, SQSTM1-NTRK1, TPR-NTRK1, TPM3-NTRK1, EML4-NTRK3, ETV6-NTRK3, RBPMS-NTRK3, SQSTM1-NTRK3, CCDC6-RET, ERC1-RET, NCOA4-RET, RASAL2-RET, TRIM24-RET, TRIM27-RET, and CCDC30-ROS1. Individual cases also showed copy number variants of EGFR and nucleotide variants and indels in pTERT, TP53, PIK3R1, AKT2, TSC2, FBXW7, JAK2, MEN1, VHL, IDH1, PTCH1, GNA11, GNAQ, SMARCA4, and CDH1. In addition to thyroidectomy and radioactive iodine, ten patients received multi-kinase and/or selective kinase inhibitor therapy, with 6 durable, objective responses and four with progressive disease. Among 47 cases with >6 months of follow-up (median [range]: 41 [6-480] months), persistent/recurrent disease, distant metastasis and thyroid cancer-related death occurred in 57%, 38% and 6%, respectively. In summary, KFTC encompass a spectrum of molecularly diverse tumors with overlapping clinicopathologic features and a tendency for clinical aggressiveness. Characteristic histology with multinodular growth and prominent fibrosis, particularly when there is extensive lymphovascular spread, should trigger molecular testing for gene rearrangements, either in a step-wise manner by prevalence or using a combined panel. Further, our findings provide information on molecular therapy in radioiodine-refractory thyroid carcinomas.
Insights
Kinase fusion-positive thyroid carcinomas (KFTC) show diverse molecular profiles and aggressive behavior. Identifying these gene rearrangements is crucial for targeted therapy in radioiodine-refractory cases.
Area of Science:
- Oncology
- Molecular Pathology
- Genetics
Background:
- Actionable kinase gene rearrangements are key in thyroid carcinoma therapy.
- Challenges remain in histopathologic recognition, genotype-tumor behavior correlation, and resistance to kinase inhibitors (KI).
- Kinase fusion-positive thyroid carcinomas (KFTC) represent a distinct molecular subtype.
Purpose of the Study:
- To characterize the clinicopathologic and molecular features of 62 KFTC.
- To identify common kinase fusions and associated genetic alterations.
- To evaluate the efficacy of kinase inhibitor therapy in radioiodine-refractory KFTC.
Main Methods:
- Retrospective review of clinical records, post-operative histology, and molecular profiles of 62 KFTC.
- Identification of kinase fusions using molecular profiling.
- Analysis of treatment outcomes for patients receiving kinase inhibitor therapy.
Main Results:
- KFTC, including papillary, poorly differentiated, undifferentiated, and secretory carcinomas, frequently exhibit multinodular growth and prominent fibrosis.
- Commonly identified kinase fusions include STRN-ALK, EML4-ALK, various BRAF, MET, NTRK, RET, and ROS1 fusions.
- Ten patients received kinase inhibitor therapy, with 6 showing durable responses; however, 57% experienced persistent/recurrent disease, 38% distant metastasis, and 6% cancer-related death within 6 months follow-up.
Conclusions:
- KFTC are molecularly diverse with overlapping features and a propensity for aggressive clinical behavior.
- Characteristic histology with multinodular growth and fibrosis, especially with lymphovascular invasion, warrants molecular testing for gene rearrangements.
- Findings support molecular therapy for radioiodine-refractory thyroid carcinomas and highlight the need for comprehensive molecular profiling.
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