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Updated: Dec 13, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Overactivated Cdc42 acts through Cdc42EP3/Borg2 and NCK to trigger DNA damage response signaling and sensitize cells
Luiz Eduardo da Silva1, Lilian Cristina Russo1, Fabio Luis Forti1
1Laboratory of Biomolecular Systems Signaling, Department of Biochemistry, Institute of Chemistry, University of São Paulo, SP, Brazil.
Abstract:
The small GTPase Cdc42, a member of the Rho family, regulates essential biological processes such as cytoskeleton remodeling, migration, vesicular trafficking and cell cycle. It was demonstrated that Cdc42 overactivation through different molecular strategies increases cell sensitivity to genotoxic stress and affects the phosphorylation status of DNA damage response proteins by unknown mechanisms. By using a combination of approaches including affinity purification/mass spectrometry (AP/MS) and colocalization microscopy analysis we were able to identify Cdc42EP3/Borg2 as a putative molecular effector of these molecular and cellular events that seem to be independent of cell line or DNA damage stimuli. We then investigated the influence of Cdc42EP3/Borg2 and other potential protein partners, such as the NCK and Septin2 proteins, which could mediate cellular responses to genotoxic stress under different backgrounds of Cdc42 activity. Clonogenic assays showed a reduced cell survival when ectopically expressing the Cdc42EP3/Borg2, NCK2 or Septin2 in an overactivated Cdc42-dependent background. Moreover, endogenous NCK appears to relocate into the nucleus upon Cdc42 overactivation, especially under genotoxic stress, and promotes the suppression of Chk1 phosphorylation. In sum, our findings reinforce Cdc42 as an important player involved in the DNA damage response acting through Cdc42EP3/Borg2 and NCK proteins following genomic instability conditions.
Insights
The small GTPase Cdc42, when overactivated, increases sensitivity to genotoxic stress. Cdc42EP3/Borg2 and NCK proteins mediate this response, impacting DNA damage repair and cell survival.
Area of Science:
- Cell Biology
- Molecular Biology
- Genetics
Background:
- The small GTPase Cdc42 regulates critical cellular functions including cytoskeleton dynamics and cell cycle progression.
- Cdc42 overactivation enhances sensitivity to genotoxic stress and alters DNA damage response protein phosphorylation via unknown mechanisms.
Purpose of the Study:
- To identify molecular effectors of Cdc42-mediated genotoxic stress response.
- To investigate the roles of Cdc42EP3/Borg2, NCK, and Septin2 in cellular responses to DNA damage under varying Cdc42 activity levels.
Main Methods:
- Affinity purification coupled with mass spectrometry (AP/MS) to identify protein interactions.
- Colocalization microscopy to analyze protein localization.
- Clonogenic assays to assess cell survival.
Main Results:
- Cdc42EP3/Borg2 was identified as a putative effector of Cdc42-mediated genotoxic stress responses.
- Ectopic expression of Cdc42EP3/Borg2, NCK2, or Septin2 reduced cell survival in an overactivated Cdc42 background.
- Endogenous NCK translocates to the nucleus upon Cdc42 overactivation, particularly under genotoxic stress, suppressing Chk1 phosphorylation.
Conclusions:
- Cdc42 plays a significant role in the DNA damage response.
- Cdc42EP3/Borg2 and NCK proteins are key mediators of Cdc42's function in response to genomic instability.
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