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Related Concept Videos

lncRNA - Long Non-coding RNAs02:39

lncRNA - Long Non-coding RNAs

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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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RNA-seq03:21

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
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Multi-omics annotation of human long non-coding RNAs.

Qianpeng Li1,2,3,4, Zhao Li1,2,3,4, Changrui Feng1,2,3,4

  • 1China National Center for Bioinformation, Beijing 100101, China.

Biochemical Society Transactions
|August 7, 2020
PubMed
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Long non-coding RNAs (lncRNAs) play crucial roles in biology and disease. Analyzing omics data aids in their discovery and functional annotation, enhancing our understanding of the human genome.

Keywords:
annotationdatabasehumanlong non-coding RNAmulti-omics data

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Area of Science:

  • Genomics
  • Molecular Biology
  • Bioinformatics

Background:

  • Long non-coding RNAs (lncRNAs) are integral to human biological processes and diseases.
  • Comprehensive lncRNA annotation is vital for understanding genome function and the RNA world.
  • The vast number and unique nature of lncRNAs present annotation challenges.

Purpose of the Study:

  • To review recent discoveries in human lncRNA research.
  • To summarize available lncRNA database resources.
  • To highlight multi-omics integrative analysis for lncRNA discovery and functional elucidation.

Main Methods:

  • Analysis of diverse omics datasets for lncRNA identification and characterization.
  • Review of specialized databases for lncRNA resources.
  • Emphasis on integrative multi-omics approaches.

Main Results:

  • High-throughput sequencing generates vast omics data, enabling lncRNA discovery.
  • Various omics data analyses have revealed significant human lncRNAs.
  • Specialized databases offer valuable resources for lncRNA research.

Conclusions:

  • Multi-omics integrative analysis is a powerful strategy for efficient lncRNA discovery.
  • Understanding lncRNA function and mechanisms is advanced through these approaches.
  • Continued research on lncRNAs is essential for biological and medical insights.