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Updated: Dec 12, 2025

T and B Cell Receptor Immune Repertoire Analysis using Next-generation Sequencing
Published on: January 12, 2021
Mucosal or systemic microbiota exposures shape the B cell repertoire
Hai Li1, Julien P Limenitakis1, Victor Greiff2
1Maurice Müller Laboratories (DBMR), Universitätsklinik für Viszerale Chirurgie und Medizin Inselspital, University of Bern, Bern, Switzerland.
The microbiota shapes B cell responses and immunoglobulin repertoires. Systemic microbial exposure diversifies IgG responses, while mucosal exposure leads to restricted IgA responses, highlighting distinct immune adaptations.
Area of Science:
- Immunology
- Microbiome research
- Systems biology
Background:
- Microbiota colonization stimulates B cells and immunoglobulin production.
- Mammals exhibit complex, individualized immunoglobulin repertoires due to diverse microbial colonization.
- Understanding how the microbiota shapes B cell populations and their responsiveness is crucial.
Purpose of the Study:
- To deconstruct how defined microbial exposures shape the B cell pool and immunoglobulin repertoire.
- To investigate the distinct immune responses generated by mucosal versus systemic microbial exposures.
- To analyze the development and characteristics of immunoglobulin repertoires in response to microbial stimuli.
Main Methods:
- Utilized a simplified model of defined transient microbial exposures in germ-free mice.
- Employed deep sequencing to analyze immunoglobulin repertoires in B cell populations and single cells.
- Compared immune responses following intestinal mucosal and intravenous systemic microbial exposures.
Main Results:
- Microbial exposures at the intestinal mucosa induced oligoclonal responses distinct from germ-free controls.
- Intravenous systemic exposure generated a diverse immunoglobulin repertoire.
- Systemic exposure broadened the IgG repertoire to microbial antigens, while mucosal exposure led to restricted IgA repertoires and attrition of specificities.
Conclusions:
- Microbial exposures induce characteristic immunoglobulin heavy-chain repertoires in B cells, particularly in memory and plasma cells.
- Systemic microbial exposure promotes a flexible and diversified IgG repertoire, contrasting with a restricted IgA repertoire from mucosal exposure.
- These findings reveal distinct host-microbe immune dynamics, with systemic exposure favoring broad defense and mucosal exposure reflecting host-microbial mutualism.
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