Related Experiment Video
Updated: Dec 12, 2025

Precise Brain Mapping to Perform Repetitive In Vivo Imaging of Neuro-Immune Dynamics in Mice
Published on: August 7, 2020
Ketamine/xylazine and barbiturates modulate microglial morphology and motility differently in a mouse model
Ines Hristovska1,2, Franck Verdonk3,4,5,6, Jean-Christophe Comte2,7
1Equipe Synaptopathies et Autoanticorps (SynatAc), Institut NeuroMyoGène, INSERM U1217/UMR CNRS 5310, Lyon, France.
Abstract:
Microglia, the resident immune cells of the brain, are highly ramified and motile and their morphology is strongly linked to their function. Microglia constantly monitor the brain parenchyma and are crucial for maintaining brain homeostasis and fine-tuning neuronal networks. Besides affecting neurons, anesthetics may have wide-ranging effects mediated by non-neuronal cells and in particular microglia. We thus examined the effect of two commonly used anesthetic agents, ketamine/xylazine and barbiturates, on microglial motility and morphology. A combination of two-photon in vivo imaging and electroencephalography (EEG) recordings in unanesthetized and anesthetized mice as well as automated analysis of ex vivo sections were used to assess morphology and dynamics of microglia. We found that administration of ketamine/xylazine and pentobarbital anesthesia resulted in quite distinct EEG profiles. Both anesthetics reduced microglial motility, but only ketamine/xylazine administration led to reduction of microglial complexity in vivo. The change of cellular dynamics in vivo was associated with a region-dependent reduction of several features of microglial cells ex vivo, such as the complexity index and the ramification length, whereas thiopental altered the size of the cytoplasm. Our results show that anesthetics have considerable effects on neuronal activity and microglial morphodynamics and that barbiturates may be a preferred anesthetic agent for the study of microglial morphology. These findings will undoubtedly raise compelling questions about the functional relevance of anesthetics on microglial cells in neuronal physiology and anesthesia-induced neurotoxicity.
Insights
Anesthetics significantly impact brain immune cell (microglia) motility and morphology. Barbiturates are preferable for studying microglial morphology during anesthesia.
Area of Science:
- Neuroscience
- Immunology
- Pharmacology
Background:
- Microglia are brain-resident immune cells vital for homeostasis and neuronal network function.
- Anesthetics can influence neuronal activity and potentially affect non-neuronal cells like microglia.
- Understanding anesthetic effects on microglia is crucial for interpreting research and understanding anesthesia-induced neurotoxicity.
Purpose of the Study:
- To investigate the differential effects of ketamine/xylazine and barbiturate anesthetics on microglial motility and morphology in vivo and ex vivo.
- To compare the impact of distinct anesthetic agents on microglial dynamics and cellular structure.
Main Methods:
- Utilized two-photon in vivo imaging and electroencephalography (EEG) recordings in mice.
- Employed automated analysis of ex vivo brain sections to assess microglial morphology.
- Compared anesthetic effects in unanesthetized and anesthetized states.
Main Results:
- Both ketamine/xylazine and pentobarbital anesthesia reduced microglial motility.
- Ketamine/xylazine uniquely decreased microglial complexity in vivo.
- Barbiturates (thiopental) altered microglial cytoplasm size, while ketamine/xylazine affected complexity and ramification ex vivo.
Conclusions:
- Anesthetics exert significant, distinct effects on microglial morphodynamics and neuronal activity.
- Barbiturates may be a more suitable anesthetic choice for research focused on microglial morphology.
- Findings highlight the importance of considering anesthetic choice in neuroscientific and immunological studies involving microglia.

