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Updated: Dec 12, 2025

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
[Fusion transcripts: Therapeutic targets in thoracic oncology]
Audrey Mansuet-Lupo1, Simon Garinet2, Diane Damotte1
1Université de Paris, faculté de médecine, Paris, France; AP-HP Centre, hôpital Cochin, service de pathologie, Paris, France; Centre de recherche des Cordeliers, Team « Inflammation, Complement and Cancer », Inserm, Paris, France.
Chromosomal rearrangements in ALK, ROS1, NTRK, and RET genes occur in lung adenocarcinoma, creating fusion proteins targeted by tyrosine kinase inhibitors. This review covers their epidemiology, resistance mechanisms, and diagnostic strategies.
Area of Science:
- Oncology
- Genetics
- Molecular Biology
Background:
- Lung adenocarcinoma frequently harbors chromosomal rearrangements involving ALK, ROS1, NTRK, and RET genes.
- These rearrangements result in fusion transcripts producing constitutively active chimeric proteins, driving oncogenesis.
- This oncogenic dependency presents a therapeutic target for tyrosine kinase inhibitors (TKIs).
Purpose of the Study:
- To review the clinical and molecular epidemiology of ALK, ROS1, NTRK, and RET gene rearrangements.
- To describe emerging mechanisms of resistance to TKIs.
- To outline molecular techniques and diagnostic strategies for detecting these genetic alterations.
Main Methods:
- Literature review of clinical and molecular studies.
- Analysis of data on gene rearrangements, fusion proteins, and TKI resistance.
- Summary of diagnostic methodologies in molecular oncology.
Main Results:
- Prevalence data on ALK, ROS1, NTRK, and RET rearrangements in lung adenocarcinoma.
- Characterization of various TKI resistance mechanisms.
- Overview of current and emerging diagnostic techniques.
Conclusions:
- Understanding the epidemiology and resistance mechanisms is crucial for effective TKI therapy.
- Accurate molecular diagnosis is essential for patient stratification and treatment selection.
- Continued research into diagnostic strategies and resistance pathways will improve outcomes.
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