Alternative splicing reverses the cell-intrinsic and cell-extrinsic pro-oncogenic potentials of YAP1

Chi Ben1, Xiaojing Wu1, Atsushi Takahashi-Kanemitsu1

  • 1Division of Microbiology, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.

Insights

Alternative splicing of YAP1 exon 6 impacts cancer. YAP1-2γ enhances proliferation but reduces tumor growth by altering immune cells, while YAP1-2α promotes tumor growth via SHP2 nuclear localization.

Area of Science:

  • Molecular Biology
  • Cancer Research
  • Cell Signaling

Background:

  • YAP1 acts as a transcriptional co-activator and regulates SHP2 localization.
  • SHP2's cytoplasmic role potentiates RAS-ERK signaling, promoting proliferation and motility.
  • Nuclear SHP2 mediates gene regulation, highlighting the importance of its trafficking in cancer.

Purpose of the Study:

  • To investigate how YAP1 splicing isoforms, specifically the presence or absence of the γ-segment (exon 6), affect YAP1's interaction with SHP2.
  • To elucidate the distinct biological and oncogenic functions of YAP1-2α and YAP1-2γ isoforms.
  • To understand the mechanistic basis for the differential regulation of cell-intrinsic and cell-extrinsic YAP1 activities by alternative splicing.

Main Methods:

  • Demonstrated the binding affinity between YAP1 isoforms and SHP2.
  • Assessed the impact of YAP1 isoforms on RAS-ERK signaling and cell proliferation/motility.
  • Quantified the differences in in vivo tumorigenicity conferred by YAP1 isoforms.
  • Investigated the regulation of CCL2 expression by YAP1 isoforms and the YAP1-2α-SHP2 complex.
  • Examined the role of SRSF3 splicing factor in YAP1 exon 6 splicing and its relation to KRAS signaling.

Main Results:

  • YAP1-2γ does not bind SHP2, unlike YAP1-2α.
  • YAP1-2γ exhibits stronger mitogenic and motogenic activities than YAP1-2α.
  • YAP1-2α-mediated nuclear SHP2 delivery weakens cytoplasmic RAS-ERK signaling.
  • YAP1-2γ confers less in vivo tumorigenicity by recruiting tumor-inhibitory macrophages.
  • YAP1-2γ transactivates, while the YAP1-2α-SHP2 complex transrepresses CCL2.
  • Oncogenic KRAS downregulates SRSF3, favoring YAP1-2α and a "cold" immune microenvironment.

Conclusions:

  • Alternative splicing of YAP1 exon 6 inversely regulates cell-intrinsic (proliferation/motility) and cell-extrinsic (tumor immunity) oncogenic activities.
  • YAP1-2γ promotes proliferation but dampens tumorigenicity by modulating the immune microenvironment.
  • YAP1-2α, favored by KRAS-induced SRSF3 downregulation, supports tumor growth and a "cold" immune phenotype.

Related Concept Videos

RNA Splicing01:32

RNA Splicing

Splicing is the process by which eukaryotic RNA is edited before its translation into protein. The RNA strand transcribed from eukaryotic DNA is called the primary transcript. The primary transcripts that become mRNAs are called precursor messenger RNAs (pre-mRNAs). Eukaryotic pre-mRNA contains alternating sequences of exons and introns. Exons are nucleotide sequences that code for proteins, whereas introns are the non-coding regions. In RNA splicing, introns are removed and exons are bonded...
59.9K
Alternative RNA Splicing02:18

Alternative RNA Splicing

Alternative RNA splicing is the regulated splicing of exons and introns to produce different mature mRNAs from a single pre-mRNA. Unlike in constitutive splicing where a single gene produces a single type of mRNA, alternative splicing allows an organism to produce multiple proteins from a single gene and plays an important role in protein diversity.
There are five types of alternative RNA splicing that vary in the ways the pre-mRNA segments are removed or retained in the mature mRNA. The first...
24.3K
Alternative RNA Splicing02:18

Alternative RNA Splicing

4.6K
Induced Pluripotent Stem Cells01:06

Induced Pluripotent Stem Cells

Stem cells are undifferentiated cells that divide and produce different cell types. Ordinarily, cells that have differentiated into a specific cell type are terminally differentiated; however, scientists have found a way to reprogram these mature cells so that they dedifferentiate and return to an unspecialized, proliferative state. These cells are pluripotent like embryonic stem cells—able to produce all cell types—and are called induced pluripotent stem cells (iPSCs).
Somatic...
5.1K
Exon Recombination02:32

Exon Recombination

The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes. 
Exon shuffling follows “splice frame rules.” Each exon...
3.9K
The Intrinsic Apoptotic Pathway01:31

The Intrinsic Apoptotic Pathway

Internal cellular stress, such as cellular injury or hypoxia, triggers intrinsic apoptosis. The B-cell lymphoma 2 (Bcl-2) family of proteins are the primary regulators of the intrinsic apoptotic pathway. For example, during DNA damage, checkpoint proteins, such as Ataxia Telangiectasia Mutated (ATM protein) and Checkpoints Factor-2 (Chk2) proteins, are activated. These proteins phosphorylate p53 which further activates pro-apoptotic proteins, such as Bax, Bak, PUMA, and Noxa, and inhibits...
7.9K