Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Overview of Metabolism01:40

Overview of Metabolism

37.0K
Living cells constantly carry out various chemical reactions which are necessary for their proper functioning. These reactions are interlinked to one another via multiple pathways. The collection of these chemical reactions is known as metabolism.
Plant Metabolism
Sunlight, the primary source of energy in plants, is first absorbed by the chlorophyll pigments present in their leaves. Plants then use this energy to carry out photosynthesis, where water is oxidized into oxygen and carbon dioxide...
37.0K
Introduction to Metabolism01:30

Introduction to Metabolism

2.3K
Metabolism encompasses all biochemical reactions in a living organism, facilitating both the breakdown and synthesis of biomolecules. These metabolic processes are categorized into catabolic and anabolic pathways, which operate in a coordinated manner to ensure energy balance and cellular function.Catabolic Pathways and Energy ReleaseCatabolic pathways involve the breakdown of complex macromolecules such as carbohydrates, lipids, and proteins into smaller structures like monosaccharides, fatty...
2.3K
Overview of Protein Metabolism01:21

Overview of Protein Metabolism

3.2K
Proteins are broken down into amino acids during digestion. Unlike fats and carbohydrates, which are stored for later use, proteins are not. Instead, amino acids are either used to produce ATP through oxidation or contribute to the creation of new proteins for the growth and repair of the body. Any surplus amino acids from the diet are converted into glucose or triglycerides rather than excreted.
Amino acids play various roles in the body once they are absorbed into cells. They are restructured...
3.2K
What is Metabolism?00:52

What is Metabolism?

130.1K
Overview
130.1K
Genomics02:02

Genomics

39.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
39.3K
Metabolism of Chemolithotrophs01:15

Metabolism of Chemolithotrophs

583
Chemolithotrophs are microorganisms that obtain energy by oxidizing inorganic molecules such as hydrogen gas (H₂), ammonia (NH₃), reduced sulfur compounds (H₂S, S²⁻), and ferrous iron (Fe²⁺). Unlike heterotrophic organisms that rely on organic carbon, chemolithotrophs transfer electrons from these inorganic donors to the electron transport chain (ETC), generating a proton motive force (PMF) that drives ATP synthesis through oxidative phosphorylation.
583

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Polyphasic characterization of Nocardioides aquaegermanicae sp. nov., a novel water-derived actinobacterium.

PloS one·2026
Same author

metaTraits: a large-scale integration of microbial phenotypic trait information.

Nucleic acids research·2025
Same author

BRENDA in 2026: a Global Core Biodata Resource for functional enzyme and metabolic data within the DSMZ Digital Diversity.

Nucleic acids research·2025
Same author

StrainInfo-the central database for linked microbial strain identifiers.

Database : the journal of biological databases and curation·2025
Same author

Bacterial membrane vesicles of <i>Pseudomonas aeruginosa</i> activate adenosine monophosphate-activated protein kinase signaling through inhibition of mitochondrial complex III.

PNAS nexus·2025
Same author

Rapamycin Plays a Pivotal Role in the Potent Antifungal Activity Exhibited Against <i>Verticillium dahliae</i> by <i>Streptomyces iranensis</i> OE54 and <i>Streptomyces lacaronensis</i> sp. nov. Isolated from Olive Roots.

Microorganisms·2025

Related Experiment Video

Updated: Dec 12, 2025

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.1K

MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context.

Julia Koblitz1,2, Dietmar Schomburg1,2, Meina Neumann-Schaal2,3

  • 1Department of Bioinformatics and Biochemistry, Technische Universität Braunschweig, Braunschweig, 38106, Germany.

F1000Research
|August 12, 2020
PubMed
Summary
This summary is machine-generated.

MetaboMAPS is a new web platform for visualizing metabolic pathway data. It allows researchers to easily create and share custom pathway maps for systems biology research.

Keywords:
Data VisualizationMetabolic MapsMetabolismOmics DataPathwaysSVGSystems Biology

More Related Videos

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

3.6K
A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

18.3K

Related Experiment Videos

Last Updated: Dec 12, 2025

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis
07:11

Author Spotlight: Emerging Technologies and Advanced Tools for Decoding Metabolomics Data Analysis

Published on: November 10, 2023

3.1K
A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information
05:01

A Pathway Association Study Tool for GWAS Analyses of Metabolic Pathway Information

Published on: July 1, 2020

3.6K
A Web Tool for Generating High Quality Machine-readable Biological Pathways
08:01

A Web Tool for Generating High Quality Machine-readable Biological Pathways

Published on: February 8, 2017

18.3K

Area of Science:

  • Systems Biology
  • Metabolomics
  • Bioinformatics

Background:

  • Metabolic pathways are crucial for understanding complex biological systems.
  • Visualizing metabolic data provides context for systems biology research.
  • Existing tools often lack flexibility for customized or novel pathways.

Purpose of the Study:

  • To introduce MetaboMAPS, a user-friendly web platform for metabolic pathway data visualization.
  • To enable storage, sharing, and downloading of metabolic maps in SVG format.
  • To support researchers in creating publication-ready visualizations of experimental data for custom pathways.

Main Methods:

  • Development of a web-based platform, MetaboMAPS.
  • Implementation of SVG format for metabolic map storage and distribution.
  • Focus on user-friendliness for non-computational users.

Main Results:

  • MetaboMAPS provides a platform for visualizing numerical data on individual metabolic pathway maps.
  • The platform supports pathway sharing without strict conventions.
  • Customized pathways beyond common knowledge can be visualized.

Conclusions:

  • MetaboMAPS offers a valuable niche for visualizing individual, customized metabolic pathways.
  • The platform facilitates the creation of publication-ready visualizations for ongoing research.
  • MetaboMAPS empowers researchers without computational backgrounds in systems biology research.