Related Experiment Video
Updated: Dec 12, 2025

Quantitative PCR-based Assay to Measure Sonic Hedgehog Signaling in Cellular Model of Ciliogenesis
Published on: January 31, 2025
GLI1/GLI2 functional interplay is required to control Hedgehog/GLI targets gene expression
Ezequiel J Tolosa1, Maite G Fernandez-Barrena1, Eriko Iguchi1
1Schulze Center for Novel Therapeutics, Division of Oncology Research, Mayo Clinic, Rochester, MN, U.S.A.
Abstract:
The Hedgehog-regulated transcription factors GLI1 and GLI2 play overlapping roles in development and disease; however, the mechanisms underlying their interplay remain elusive. We report for the first time that GLI1 and GLI2 physically and functionally interact in cancer cells. GLI1 and GLI2 were shown to co-immunoprecipitate in PANC1 pancreatic cancer cells and RMS13 rhabdomyosarcoma cells. Mapping analysis demonstrated that the zinc finger domains of both proteins are required for their heteromerization. RNAi knockdown of either GLI1 or GLI2 inhibited expression of many well-characterized GLI target genes (BCL2, MYCN, PTCH2, IL7 and CCND1) in PANC1 cells, whereas PTCH1 expression was only inhibited by GLI1 depletion. qPCR screening of a large set of putative canonical and non-canonical Hedgehog/GLI targets identified further genes (e.g. E2F1, BMP1, CDK2) strongly down-regulated by GLI1 and/or GLI2 depletion in PANC1 cells, and demonstrated that ANO1, AQP1 and SOCS1 are up-regulated by knockdown of either GLI1 or GLI2. Chromatin immunoprecipitation showed that GLI1 and GLI2 occupied the same regions at the BCL2, MYCN and CCND1 promoters. Furthermore, depletion of GLI1 inhibited GLI2 occupancy at these promoters, suggesting that GLI1/GLI2 interaction is required for the recruitment of GLI2 to these sites. Together, these findings indicate that GLI1 and GLI2 co-ordinately regulate the transcription of some genes, and provide mechanistic insight into the roles of GLI proteins in carcinogenesis.
Insights
This study reveals that GLI1 and GLI2 transcription factors physically interact in cancer cells, co-regulating gene expression and providing new insights into cancer development. This GLI1/GLI2 interaction is crucial for GLI2 recruitment to target gene promoters.
Area of Science:
- Molecular Biology
- Cancer Research
- Developmental Biology
Background:
- The transcription factors GLI1 and GLI2, regulated by the Hedgehog signaling pathway, have overlapping functions in development and disease.
- The precise mechanisms governing the interaction and coordinated action of GLI1 and GLI2 remain largely unknown.
Purpose of the Study:
- To investigate the physical and functional interaction between GLI1 and GLI2 in cancer cells.
- To elucidate the molecular mechanisms underlying the interplay of GLI1 and GLI2 in regulating gene expression.
Main Methods:
- Co-immunoprecipitation assays to detect GLI1-GLI2 interaction in PANC1 and RMS13 cancer cell lines.
- RNA interference (RNAi) to deplete GLI1 or GLI2 and assess the impact on target gene expression.
- Quantitative PCR (qPCR) to screen a broad range of potential GLI target genes.
- Chromatin immunoprecipitation (ChIP) to determine the occupancy of GLI1 and GLI2 at target gene promoters.
Main Results:
- GLI1 and GLI2 were found to physically interact in cancer cells, with their zinc finger domains mediating heteromerization.
- Depletion of either GLI1 or GLI2 affected the expression of numerous GLI target genes, including BCL2, MYCN, and CCND1.
- GLI1 depletion specifically inhibited PTCH1 expression, while ANO1, AQP1, and SOCS1 expression increased upon GLI1 or GLI2 knockdown.
- Chromatin immunoprecipitation revealed that GLI1 and GLI2 bind to common promoter regions, and GLI1 is necessary for GLI2 recruitment.
Conclusions:
- GLI1 and GLI2 physically and functionally interact in cancer cells, forming a complex that co-ordinately regulates the transcription of specific genes.
- This interaction is essential for the recruitment of GLI2 to target gene promoters, offering mechanistic insight into the roles of GLI proteins in carcinogenesis.
More Related Videos
Related Concept Videos
Hedgehog Signaling Pathway
Role Of Notch Signalling In Intestinal Stem Cell Renewal
Direct cell-to-cell contact is needed for the activation of Notch signaling. The signal is initiated when a notch ligand binds to a receptor on an adjacent cell, also...
Regulation of Angiogenesis and Blood Supply
Regulation of Expression Occurs at Multiple Steps
Regulation of Expression Occurs at Multiple Steps
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Regulation of Expression at Multiple Steps

