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Updated: May 3, 2026

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Published on: February 29, 2016
Mini-P1 plasmid replication: the autoregulation-sequestration paradox
D K Chattoraj1, R J Mason, S H Wickner
1Laboratory of Biochemistry, National Cancer Institute, Bethesda, Maryland 20892.
Abstract:
It has been proposed that the initiator protein RepA is rate limiting for mini-P1 plasmid replication, and that the role of the plasmid copy number control locus is to sequester the initiator and thus reduce replication. This proposal appears inconsistent with the observation that RepA is autoregulated, since the protein lost by sequestration should be replenished. A resolution of this autoregulation-sequestration paradox is possible if the sequestered RepA, unavailable for replication, is still available for promoter repression. We demonstrate that RepA binds to the control locus and to the promoter region simultaneously, causing the intervening DNA to loop. DNA looping could provide the requisite mechanism by which RepA bound to the control locus might exert repression.
Insights
Initiator protein RepA controls mini-P1 plasmid replication. DNA looping by RepA simultaneously binding the control locus and promoter resolves the autoregulation-sequestration paradox, enabling repression.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- The initiator protein RepA is proposed as rate-limiting for mini-P1 plasmid replication.
- Plasmid copy number control is thought to sequester RepA, reducing replication.
- RepA autoregulation presents a paradox with sequestration, as lost protein should be replenished.
Purpose of the Study:
- To resolve the paradox between RepA autoregulation and sequestration in mini-P1 plasmid replication control.
- To investigate the mechanism by which sequestered RepA might still exert regulatory control.
Main Methods:
- Demonstration of RepA binding to both the control locus and promoter region.
- Observation of DNA looping induced by simultaneous RepA binding.
Main Results:
- RepA binds simultaneously to the mini-P1 plasmid control locus and promoter region.
- This simultaneous binding results in the looping of the intervening DNA.
- DNA looping provides a mechanism for RepA to exert repression.
Conclusions:
- RepA-mediated DNA looping resolves the autoregulation-sequestration paradox.
- Sequestered RepA remains available for promoter repression, not just replication.
- This mechanism explains how RepA controls plasmid copy number.
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