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Updated: Dec 12, 2025

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
DNMT1 and DNMT3B regulate tumorigenicity of human prostate cancer cells by controlling RAD9 expression through
Aiping Zhu1, Kevin M Hopkins1, Richard A Friedman2,3
1Center for Radiological Research, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Abstract:
Prostate cancer is the second most common type of cancer and the second leading cause of cancer death in American men. RAD9 stabilizes the genome, but prostate cancer cells and tumors often have high quantities of the protein. Reduction of RAD9 level within prostate cancer cells decreases tumorigenicity of nude mouse xenographs and metastasis phenotypes in culture, indicating that RAD9 overproduction is essential for the disease. In prostate cancer DU145 cells, CpG hypermethylation in a transcription suppressor site of RAD9 intron 2 causes high-level gene expression. Herein, we demonstrate that DNA methyltransferases DNMT1 and DNMT3B are highly abundant in prostate cancer cells DU145, CWR22, LNCaP and PC-3; yet, these DNMTs bind primarily to the transcription suppressor in DU145, the only cells where methylation is critical for RAD9 regulation. For DU145 cells, DNMT1 or DNMT3B shRNA reduced RAD9 level and tumorigenicity, and RAD9 ectopic expression restored this latter activity in the DNMT knockdown cells. High levels of RAD9, DNMT1, DNMT3B and RAD9 transcription suppressor hypermethylation were significantly correlated in prostate tumors, and not in normal prostate tissues. Based on these results, we propose a novel model where RAD9 is regulated epigenetically by DNMT1 and DNMT3B, via targeted hypermethylation, and that consequent RAD9 overproduction promotes prostate tumorigenesis.
Insights
High RAD9 protein levels drive prostate cancer growth and metastasis. DNA methyltransferases DNMT1 and DNMT3B cause this by hypermethylating RAD9, offering a potential therapeutic target for prostate cancer.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- Prostate cancer is a leading cause of cancer death in men.
- RAD9 protein stabilizes the genome but is overproduced in prostate cancer.
- RAD9 overproduction is critical for prostate cancer progression and metastasis.
Purpose of the Study:
- To investigate the regulatory mechanisms behind RAD9 overproduction in prostate cancer.
- To determine the role of DNA methyltransferases (DNMTs) in RAD9 regulation.
- To explore the potential of targeting RAD9 or its regulators for prostate cancer therapy.
Main Methods:
- Analysis of RAD9, DNMT1, and DNMT3B levels in prostate cancer cell lines (DU145, CWR22, LNCaP, PC-3) and tumors.
- Investigating the effect of DNMT inhibition (shRNA) on RAD9 expression and tumorigenicity in DU145 cells.
- Assessing the impact of RAD9 re-expression in DNMT-knockdown cells.
- Correlating RAD9, DNMT levels, and RAD9 promoter methylation in clinical prostate tumor samples.
Main Results:
- RAD9, DNMT1, and DNMT3B are highly abundant in prostate cancer cells.
- CpG hypermethylation in RAD9 intron 2 drives high RAD9 expression in DU145 cells.
- DNMT1 and DNMT3B target this suppressor site in DU145 cells, where methylation is key for RAD9 regulation.
- Reducing DNMT1 or DNMT3B decreased RAD9 levels and tumorigenicity; RAD9 re-expression restored tumorigenicity.
- High RAD9, DNMT1, DNMT3B, and RAD9 promoter hypermethylation strongly correlated in prostate tumors.
Conclusions:
- RAD9 is epigenetically regulated by DNMT1 and DNMT3B through targeted hypermethylation in prostate cancer.
- Consequent RAD9 overproduction promotes prostate tumorigenesis.
- This epigenetic pathway represents a novel therapeutic strategy for prostate cancer.
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