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Updated: Dec 12, 2025

Dissection of Enhancer Function Using Multiplex CRISPR-based Enhancer Interference in Cell Lines
Published on: June 2, 2018
Targeting complexes of super-enhancers is a promising strategy for cancer therapy
Chuqian Zheng1, Min Liu1,2, Hong Fan1
1Department of Medical Genetics and Developmental Biology, School of Medicine, The Key Laboratory of Developmental Genes and Human Diseases, Ministry of Education, Southeast University, Nanjing, Jiangsu 210009, P.R. China.
Abstract:
The hyperactivation and overexpression of critical oncogenes is a common occurrence in multiple types of malignant tumors. Recently, the abnormal activation mechanism of an oncogene by a super-enhancer (SE) has attracted significant attention. A series of changes (insertion, deletion, translocation and rearrangement) in the genome occurring in cancer cells may generate new SEs, leading to the overexpression of SE-driven oncogenes. SEs are composed of typical enhancers densely loaded with mediator complexes, transcription factors, and chromatin regulators, and drive the overexpression of oncogenes associated with cellular identity and disease. Cyclin-dependent kinase 7 (CDK7) and bromodomain protein 4 (BRD4) are critical mediator complexes associated with SE-mediated transcription. Clinical trials have shown that emerging small-molecule inhibitors (CDK7 and BRD4 inhibitor), targeting the SE exert a notable effect on cancer treatment. Increasing evidences has illustrated that the SE and its associated complexes play a critical role in the development of various types of cancer. The present review discusses the composition, function and regulation of SEs and their contribution to oncogenic transcription. In addition, creative therapeutic approaches that target SE, their advantages and disadvantages, as well as the problems with their clinical application are discussed. It was found that targeting SE may be used in conventional treatment and establish more access for patients with cancer.
Insights
Super-enhancers (SEs) drive oncogene overexpression in cancer. Targeting SEs with inhibitors like CDK7 and BRD4 shows promise for novel cancer therapies and improved patient outcomes.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Super-enhancers (SEs) are critical regulatory elements driving oncogene overexpression in various cancers.
- Genomic alterations in cancer cells can create novel SEs, leading to aberrant gene transcription.
- SEs are densely packed with transcription factors and mediator complexes, including CDK7 and BRD4.
Purpose of the Study:
- To review the composition, function, and regulation of SEs in oncogenic transcription.
- To discuss therapeutic strategies targeting SEs for cancer treatment.
- To evaluate the advantages, disadvantages, and clinical applicability of SE-targeting therapies.
Main Methods:
- Literature review on super-enhancers and their role in cancer.
- Analysis of the molecular mechanisms underlying SE-mediated oncogene activation.
- Examination of clinical trial data for SE-targeting inhibitors.
Main Results:
- SEs play a crucial role in the development and progression of multiple malignant tumors.
- Small-molecule inhibitors targeting CDK7 and BRD4 demonstrate significant therapeutic potential.
- Targeting SEs offers a promising avenue for conventional cancer treatment strategies.
Conclusions:
- SEs are key drivers of oncogene overexpression and cancer development.
- Targeting SEs with specific inhibitors represents a viable therapeutic approach.
- Further clinical application of SE-targeting therapies may enhance patient access to effective treatments.
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